Pseudomonas sp. 1D4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 1D4 is characterized by having a single replicon, which is essential for its genomic organization and cellular function. The genome of this strain is available under the accession number LXJQ00000000.1, indicating its documented genetic sequence in public databases. As a member of the Pseudomonas genus, Pseudomonas sp. 1D4 may exhibit traits typical of this group, including metabolic versatility and the ability to thrive in various environments. Pseudomonas species are known for their capacity to degrade a wide range of organic compounds, which can contribute to bioremediation processes in contaminated environments. The presence of a single replicon suggests that Pseudomonas sp. 1D4 may have streamlined its genetic architecture, potentially enhancing its adaptability to specific ecological niches. This adaptability is crucial for survival in fluctuating environments, allowing the bacterium to respond effectively to changes in nutrient availability and stress conditions. Overall, the traits of Pseudomonas sp. 1D4 underscore its potential ecological role, particularly in nutrient cycling and environmental cleanup, reflecting the broader capabilities of the Pseudomonas genus in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 1D4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 1D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 1D4 contig00139, whole genome shotgun sequence.

Gene Summary

Adenine Count

1003855 bp

Thymine Count

967416 bp

Guanine Count

1903315 bp

Cytosine Count

1974545 bp

Genome Length

5849131 bp

Protein-coding Genes

5205 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion protein icmfA7D27_05210Not AvailableNegative1135459 - 1138971128863.0
hypothetical proteinA7D27_05215Not AvailableNegative1138968 - 114031749240.4
type vi secretion system-associated proteinA7D27_05220Not AvailableNegative1140324 - 114165848635.3
type vi secretion system-associated lipoproteinA7D27_05225Not AvailableNegative1141675 - 114215417156.6
fha domain-containing proteinA7D27_05230Not AvailableNegative1142237 - 114393759838.8
type vi secretion protein impaA7D27_05235Not AvailablePositive1144341 - 114537237254.8
type vi secretion system-associated proteinA7D27_05240Not AvailablePositive1145459 - 114597418652.4
evpb family type vi secretion proteinA7D27_05245Not AvailablePositive1145987 - 114748355464.5
hcp1 family type vi secretion system effectorA7D27_05250Not AvailablePositive1147558 - 114804617361.7
hypothetical proteinA7D27_05255Not AvailablePositive1148118 - 114854916389.1

Displaying genes 1081 – 1090 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.