Pseudomonas protegens strain 11

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas protegens strain 11 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a heterotroph, deriving its energy from organic compounds, and it requires oxygen for its metabolic processes, thus categorizing it as an aerobe. The optimal growth temperature for this strain is 25°C, placing it in the mesophilic temperature range, which is conducive to its development in various habitats. P. protegens strain 11 has a free-living biotic relationship, indicating that it does not depend on a host for survival. However, it has been noted to have interactions with the host organism Craugastor crassidigitus. This relationship may suggest ecological roles in nutrient cycling or microbial community dynamics within the habitats it occupies. The bacterium is characterized by having a single replicon and two membranes, which is typical of Gram-negative bacteria. Its ability to thrive in multiple habitats underlines its ecological versatility. The accession number for this strain is LUUE00000000.1, which can be referenced for further genomic and taxonomic studies. In summary, Pseudomonas protegens strain 11's characteristics highlight its adaptability as a free-living organism in diverse environments, potentially contributing to ecological interactions and nutrient dynamics in its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas protegens
Strainstrain 11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas protegens strain 11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Craugastor crassidigitus
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas protegens strain 11 scaffold_99, whole genome shotgun

Gene Summary

Adenine Count

1359144 bp

Thymine Count

1323006 bp

Guanine Count

2159815 bp

Cytosine Count

2211552 bp

Genome Length

7053517 bp

Protein-coding Genes

6002 genes

Non-Coding Genes

240 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class ii poly(r)-hydroxyalkanoic acid synthaseA1395_25165Not AvailablePositive6021488 - 602316762472.4
poly(3-hydroxyalkanoate) depolymeraseA1395_25170Not AvailablePositive6023298 - 602415831884.2
class ii poly(r)-hydroxyalkanoic acid synthaseA1395_25175Not AvailablePositive6024267 - 602594962510.1
tetr family transcriptional regulatorA1395_25180Not AvailablePositive6026015 - 602663523439.9
poly(3-hydroxyalkanoate) granule-associated protein phafA1395_25185Not AvailableNegative6026703 - 602754528063.9
poly(3-hydroxyalkanoate) granule-associated protein phaiA1395_25190Not AvailableNegative6027556 - 602797815295.5
polyhydroxyalkanoic acid system proteinA1395_25195Not AvailableNegative6028177 - 60284529828.94
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseA1395_25200Not AvailablePositive6028608 - 602937828385.3
sterol-binding proteinA1395_25205Not AvailablePositive6029378 - 603000123108.6
ubiquinone biosynthesis regulatory protein kinase ubibA1395_25210Not AvailablePositive6029998 - 603160261345.1

Displaying genes 5381 – 5390 of 6242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.