Pseudomonas protegens strain 11

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas protegens strain 11 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a heterotroph, deriving its energy from organic compounds, and it requires oxygen for its metabolic processes, thus categorizing it as an aerobe. The optimal growth temperature for this strain is 25°C, placing it in the mesophilic temperature range, which is conducive to its development in various habitats. P. protegens strain 11 has a free-living biotic relationship, indicating that it does not depend on a host for survival. However, it has been noted to have interactions with the host organism Craugastor crassidigitus. This relationship may suggest ecological roles in nutrient cycling or microbial community dynamics within the habitats it occupies. The bacterium is characterized by having a single replicon and two membranes, which is typical of Gram-negative bacteria. Its ability to thrive in multiple habitats underlines its ecological versatility. The accession number for this strain is LUUE00000000.1, which can be referenced for further genomic and taxonomic studies. In summary, Pseudomonas protegens strain 11's characteristics highlight its adaptability as a free-living organism in diverse environments, potentially contributing to ecological interactions and nutrient dynamics in its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas protegens
Strainstrain 11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas protegens strain 11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Craugastor crassidigitus
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas protegens strain 11 scaffold_99, whole genome shotgun

Gene Summary

Adenine Count

1359144 bp

Thymine Count

1323006 bp

Guanine Count

2159815 bp

Cytosine Count

2211552 bp

Genome Length

7053517 bp

Protein-coding Genes

6002 genes

Non-Coding Genes

240 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramate--l-alanine ligaseA1395_16115Not AvailableNegative3987614 - 398906852331.1
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseA1395_16120Not AvailableNegative3989061 - 399013137680.1
cell division protein ftswA1395_16125Not AvailableNegative3990121 - 399133844395.6
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseA1395_16130Not AvailableNegative3991335 - 399268147782.3
phospho-n-acetylmuramoyl-pentapeptide- transferaseA1395_16135Not AvailableNegative3992687 - 399376939347.4
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseA1395_16140Not AvailableNegative3993769 - 399513647187.7
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseA1395_16145Not AvailableNegative3995129 - 399659251862.0
cell division proteinA1395_16150Not AvailableNegative3996592 - 399833163024.5
cell division protein ftslA1395_16155Not AvailableNegative3998328 - 399862110810.3
16s rrna (cytosine(1402)-n(4))-methyltransferaseA1395_16160Not AvailableNegative3998618 - 399956534491.4

Displaying genes 3611 – 3620 of 6242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.