Pseudomonas putida strain CBF10-2

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain CBF10-2 is a facultatively anaerobic, Gram-negative bacterium that primarily inhabits soil and wastewater environments. This species exhibits a rod shape and is characterized by its mobility, facilitated by the presence of flagella. As a heterotroph, P. putida strain CBF10-2 derives its energy from organic compounds, enabling it to thrive in diverse ecological niches. This strain is mesophilic, indicating it prefers moderate temperature ranges for optimal growth. It possesses a single replicon and features a double-membrane structure, which is typical of Gram-negative bacteria. P. putida strain CBF10-2 is free-living, establishing various biotic relationships with a range of hosts, including Homo sapiens, various plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as several green algae species. While Pseudomonas putida is often recognized for its beneficial roles in environmental contexts, it is important to note that this strain has been associated with nosocomial infections in animals, indicating a potential pathogenicity under certain conditions. Such attributes highlight the dual nature of Pseudomonas putida strain CBF10-2; it is an organism that can contribute positively to ecological functions while also posing risks in specific scenarios, particularly in health contexts. Understanding these dynamics is crucial for managing its presence in both natural and clinical environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain CBF10-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain CBF10-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain CBF10-2 NODE_98, whole genome shotgun

Gene Summary

Adenine Count

1110653 bp

Thymine Count

1109953 bp

Guanine Count

1949423 bp

Cytosine Count

1950596 bp

Genome Length

6120625 bp

Protein-coding Genes

5202 genes

Non-Coding Genes

189 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter permease subunit pstcAYO28_25555Q87C90Positive5034190 - 503515534009.6
phosphate abc transporter, permease protein pstaAYO28_25560P58655Positive5035155 - 503604831138.4
phosphate abc transporter atp-binding proteinAYO28_25565Q88JJ0Positive5036124 - 503688528271.2
hypothetical proteinAYO28_25570Not AvailablePositive5036983 - 503768126370.6
hypothetical proteinAYO28_25575Not AvailablePositive5037681 - 503829823354.1
arsenic transporterAYO28_25580P9WPD8Negative5038322 - 503957543961.0
mfs transporterAYO28_25585P9WJX0Negative5039583 - 504082742530.9
diguanylate cyclaseAYO28_25590Not AvailableNegative5040887 - 504238654688.9
abc transporter substrate-binding proteinAYO28_25595A0A0A1H8I4Negative5042550 - 504334427567.4
amp-dependent synthetaseAYO28_25600Not AvailablePositive5043772 - 504533756629.4

Displaying genes 4491 – 4500 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 348 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total