Pseudomonas putida strain CBF10-2

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain CBF10-2 is a facultatively anaerobic, Gram-negative bacterium that primarily inhabits soil and wastewater environments. This species exhibits a rod shape and is characterized by its mobility, facilitated by the presence of flagella. As a heterotroph, P. putida strain CBF10-2 derives its energy from organic compounds, enabling it to thrive in diverse ecological niches. This strain is mesophilic, indicating it prefers moderate temperature ranges for optimal growth. It possesses a single replicon and features a double-membrane structure, which is typical of Gram-negative bacteria. P. putida strain CBF10-2 is free-living, establishing various biotic relationships with a range of hosts, including Homo sapiens, various plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as several green algae species. While Pseudomonas putida is often recognized for its beneficial roles in environmental contexts, it is important to note that this strain has been associated with nosocomial infections in animals, indicating a potential pathogenicity under certain conditions. Such attributes highlight the dual nature of Pseudomonas putida strain CBF10-2; it is an organism that can contribute positively to ecological functions while also posing risks in specific scenarios, particularly in health contexts. Understanding these dynamics is crucial for managing its presence in both natural and clinical environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain CBF10-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain CBF10-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain CBF10-2 NODE_98, whole genome shotgun

Gene Summary

Adenine Count

1110653 bp

Thymine Count

1109953 bp

Guanine Count

1949423 bp

Cytosine Count

1950596 bp

Genome Length

6120625 bp

Protein-coding Genes

5202 genes

Non-Coding Genes

189 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative tail proteinAYO28_14090Not AvailableNegative1951126 - 195197129915.7
Bacteriophage tail length determination proteinAYO28_14095Q6QIA5Negative1951980 - 195457789925.7
Hypothetical proteinAYO28_14100Not AvailableNegative1954708 - 195500411015.1
Tail proteinAYO28_14105P22502Negative1955026 - 195553518430.6
Tail sheath proteinAYO28_14110Q02TE1Negative1955548 - 195671441667.1
Tail proteinAYO28_14115Not AvailableNegative1956796 - 195717614453.7
Tail fiber proteinAYO28_14120P26700Negative1958109 - 195869920946.0
Tail protein iAYO28_14125P26701Negative1958696 - 195930122433.9
Baseplate assembly proteinAYO28_14130P51767Negative1959303 - 196018431842.6
Putative baseplate assembly protein wAYO28_14135Not AvailableNegative1960181 - 196050711999.6

Displaying genes 31 – 40 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 348 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total