Sphingobium yanoikuyae strain CD09_2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium yanoikuyae strain CD09_2 is a notable bacterium characterized by the presence of flagella, which suggests a capability for motility. This trait may facilitate its movement within various environments, potentially aiding in colonization and nutrient acquisition. The strain has a single replicon, indicating a streamlined genetic architecture that could be advantageous for its adaptability and efficiency in resource utilization. The genome of Sphingobium yanoikuyae strain CD09_2 is cataloged under the accession number LSTR00000000.1, providing a reference for researchers interested in its genetic makeup and potential applications. The genomic information may offer insights into metabolic pathways, ecological roles, and interactions with other microorganisms. Ecologically, the presence of flagella could suggest an ability to thrive in diverse habitats, as motility often allows bacteria to respond to environmental stimuli, such as nutrient availability or changes in habitat. This adaptability is crucial for survival in fluctuating environments and can influence microbial community dynamics. Further research on Sphingobium yanoikuyae strain CD09_2 may uncover its specific ecological roles and contributions to biogeochemical cycles, particularly in environments where its motility aids in its ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
Strainstrain CD09_2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain CD09_2 CD09_2contig_99, whole genome

Gene Summary

Adenine Count

979193 bp

Thymine Count

988684 bp

Guanine Count

1771524 bp

Cytosine Count

1764150 bp

Genome Length

5503838 bp

Protein-coding Genes

5033 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAX777_06345Not AvailableNegative1875022 - 187542614758.9
deoxyuridine 5'-triphosphate nucleotidohydrolaseAX777_06350A5VG00Negative1875432 - 187588715890.2
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseAX777_06355P44953Negative1875862 - 187710643464.4
2-octaprenylphenol hydroxylaseAX777_06360B1XWR5Negative1877156 - 187869756788.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseAX777_06365Q9X3X2Negative1878705 - 187943627199.6
formamidopyrimidine-dna glycosylaseAX777_06370A5VG06Positive1879617 - 188042929454.6
30s ribosomal protein s20AX777_06375Q1GN81Positive1880547 - 18808109337.59
chromosomal replication initiation protein dnaaAX777_06380Q1GN68Positive1881242 - 188266051915.7
peptidylprolyl isomeraseAX777_06385Not AvailablePositive1882728 - 188333321118.6
response regulator pledAX777_06390Q9I310Negative1883344 - 188503860940.6

Displaying genes 1691 – 1700 of 5088 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

333 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da

Displaying 1–10 of 333 metabolites

Health Effects

No health effects information available for this bacterium.