Micromonospora rifamycinica strain AM105

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micromonosporales

Family

Micromonosporaceae

Genus

Micromonospora

Description

Micromonospora rifamycinica strain AM105 is a significant bacterium primarily found in the rhizosphere soil, where it plays a role in the soil microbiome and plant health. This strain possesses true flagella, which facilitate motility, allowing it to navigate its environment effectively. Genetically, Micromonospora rifamycinica AM105 has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability in soil ecosystems. The strain is cataloged under the accession number LRMV00000000.1, which provides a reference for its genomic data and aids in further studies regarding its characteristics and potential applications. The habitat of Micromonospora rifamycinica AM105 in the rhizosphere suggests its involvement in interactions with plant roots, possibly influencing nutrient uptake and plant growth. This ecological niche emphasizes the importance of such microbes in agricultural settings, where beneficial bacteria can enhance soil health and contribute to sustainable farming practices. The presence of true flagella may also indicate an adaptation to the dynamic environment of the rhizosphere, allowing for efficient colonization and interaction with plant roots, which can be crucial for plant-microbe interactions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora rifamycinica
Strainstrain AM105

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Micromonospora rifamycinica strain AM105 contig200, whole genome

Gene Summary

Adenine Count

922099 bp

Thymine Count

923506 bp

Guanine Count

2498740 bp

Cytosine Count

2504199 bp

Genome Length

6848544 bp

Protein-coding Genes

4838 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramate--alanine ligaseAWV63_02845Not AvailableNegative633324 - 63474250073.0
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseAWV63_02850Not AvailableNegative634774 - 63588039205.9
cell cycle proteinAWV63_02855Not AvailableNegative635880 - 63731349804.8
phospho-n-acetylmuramoyl-pentapeptide- transferaseAWV63_02860Not AvailableNegative637558 - 63869439745.4
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAWV63_02865Not AvailableNegative638691 - 64010348089.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseAWV63_02870Not AvailableNegative640100 - 64162351474.0
penicillin-binding proteinAWV63_02875Not AvailableNegative641715 - 64403382071.3
hypothetical proteinAWV63_02880Not AvailableNegative644039 - 64464121140.3
ribosomal rna small subunit methyltransferase hAWV63_02885Not AvailableNegative644638 - 64574740043.7
division/cell wall cluster transcriptional repressor mrazAWV63_02890Not AvailableNegative645958 - 64638916050.0

Displaying genes 551 – 560 of 4880 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.