Micromonospora rifamycinica strain AM105

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micromonosporales

Family

Micromonosporaceae

Genus

Micromonospora

Description

Micromonospora rifamycinica strain AM105 is a significant bacterium primarily found in the rhizosphere soil, where it plays a role in the soil microbiome and plant health. This strain possesses true flagella, which facilitate motility, allowing it to navigate its environment effectively. Genetically, Micromonospora rifamycinica AM105 has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability in soil ecosystems. The strain is cataloged under the accession number LRMV00000000.1, which provides a reference for its genomic data and aids in further studies regarding its characteristics and potential applications. The habitat of Micromonospora rifamycinica AM105 in the rhizosphere suggests its involvement in interactions with plant roots, possibly influencing nutrient uptake and plant growth. This ecological niche emphasizes the importance of such microbes in agricultural settings, where beneficial bacteria can enhance soil health and contribute to sustainable farming practices. The presence of true flagella may also indicate an adaptation to the dynamic environment of the rhizosphere, allowing for efficient colonization and interaction with plant roots, which can be crucial for plant-microbe interactions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora rifamycinica
Strainstrain AM105

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Micromonospora rifamycinica strain AM105 contig200, whole genome

Gene Summary

Adenine Count

922099 bp

Thymine Count

923506 bp

Guanine Count

2498740 bp

Cytosine Count

2504199 bp

Genome Length

6848544 bp

Protein-coding Genes

4838 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyketide cyclaseAWV63_10745Not AvailablePositive2485691 - 248633223066.7
hypothetical proteinAWV63_10750Not AvailablePositive2486606 - 248721722495.8
nudix hydrolaseAWV63_10755Not AvailablePositive2487229 - 248773818364.0
alkanesulfonate monooxygenaseAWV63_10760Not AvailableNegative2487930 - 248909041409.3
aliphatic sulfonate abc transporter substrate-binding proteinAWV63_10765Not AvailablePositive2489220 - 249019133824.7
abc transporter permeaseAWV63_10770Not AvailablePositive2490203 - 249102128646.9
aliphatic sulfonate abc transporter atp-binding proteinAWV63_10775Not AvailablePositive2491099 - 249181225423.9
selenium-binding proteinAWV63_10780Not AvailablePositive2491828 - 249327352624.7
hypothetical proteinAWV63_10785Not AvailablePositive2493270 - 249390521348.8
1,4-beta-xylanaseAWV63_10790Not AvailableNegative2494057 - 249545748289.0

Displaying genes 2051 – 2060 of 4880 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.