Escherichia coli strain 102928 jtg7180000001263f_7180000001325f

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 102928 jtg7180000001263f_7180000001325f is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. This strain exhibits mobility, facilitated by the presence of flagella, and typically arranges itself in singles or pairs. It is mesophilic, with an optimal growth temperature of 37°C, which aligns with the body temperature of its primary hosts, including humans (Homo sapiens) and various animals such as chickens (Gallus gallus), cattle (Bos taurus), and pigs (Sus scrofa). E. coli strain 102928 has been identified as free-living and can inhabit a wide range of organisms, demonstrating a complex biotic relationship. The strain is associated with numerous health effects, particularly in humans, where it is known to cause urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). It is also linked to foodborne infections and various complications in different hosts, including peritonitis and colibacillosis. The pathogenesis of this strain highlights its significance in both human health and veterinary medicine. Its ability to cause a variety of diseases underscores the importance of monitoring and understanding E. coli strains in clinical and ecological settings. This strain's diverse host range and the spectrum of diseases it can induce suggest a complex interplay between bacteria and their hosts, reflecting the ecological dynamics of microbial populations in host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 102928 jtg7180000001263f_7180000001325f

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 102928 jtg7180000001263f_7180000001325f
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 102928 jtg7180000001263f_7180000001325f


Gene Summary

Adenine Count

1306316 bp

Thymine Count

1307496 bp

Guanine Count

1332954 bp

Cytosine Count

1326994 bp

Genome Length

5273760 bp

Protein-coding Genes

4905 genes

Non-Coding Genes

419 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-ser;Not AvailableNot AvailablePositive137675 - 137762Not Available
Gpe family tail proteinAWP75_00690Not AvailableNegative137966 - 1382028878.45
Tail proteinAWP75_00695Not AvailableNegative138130 - 13849513152.6
Major tail tube proteinAWP75_00700Not AvailableNegative138550 - 13906218879.6
Tail sheath family proteinAWP75_00705Not AvailableNegative139062 - 14024643421.4
Bacteriop2 gpd proteinAWP75_00710Not AvailablePositive140404 - 14151341164.8
hypothetical proteinAWP75_00715Not AvailableNegative141696 - 14313253903.5
Ogr/delta-like zinc finger family proteinAWP75_00720Not AvailablePositive143251 - 1435119692.39
Hok/gef family proteinAWP75_00725Not AvailablePositive143702 - 1438425226.58
Hypothetical proteinAWP75_00730Not AvailableNegative144148 - 14444711354.6

Displaying genes 11 – 20 of 5324 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total