Clostridium butyricum strain 300064

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium butyricum strain 300064 is a Gram-positive, anaerobic bacterium primarily found in the rumen of various hosts, including Homo sapiens (humans) and Sus scrofa (domestic pigs). This strain exhibits mesophilic characteristics, indicating that it thrives within moderate temperature ranges typical of mammalian digestive systems. Notably, C. butyricum strain 300064 has a single replicon, which is relevant for its genetic stability and replication dynamics. The strain has been assigned the accession number LRDH00000000.1, which allows for its identification and retrieval in genomic databases. The ecological role of C. butyricum in the rumen is significant, as it contributes to the fermentation processes that are essential for the breakdown of complex carbohydrates and the production of short-chain fatty acids, including butyrate. Butyrate is crucial for the health and energy supply of intestinal cells. Thus, C. butyricum strain 300064 not only plays an important role in the digestive physiology of its hosts but also contributes to the overall microbial ecosystem within the rumen, influencing nutrient availability and gut health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium butyricum
Strainstrain 300064

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatrumen
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium butyricum strain 300064 contig_99, whole genome

Gene Summary

Adenine Count

1662204 bp

Thymine Count

1683454 bp

Guanine Count

657737 bp

Cytosine Count

675987 bp

Genome Length

4679382 bp

Protein-coding Genes

3832 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine--trna ligaseAWN73_20300Not AvailablePositive4651404 - 465279553396.1
udp-n-acetylmuramoylalanine--d-glutamate ligaseAWN73_20305Not AvailablePositive4653089 - 465446551349.7
d-alanyl-d-alanine carboxypeptidaseAWN73_20310Not AvailablePositive4654733 - 465611851347.2
segregation and condensation protein aAWN73_20315Not AvailablePositive4656408 - 465716030001.6
segregation/condensation protein bAWN73_20320Not AvailablePositive4657147 - 465779724775.7
sporulation protein ytfjAWN73_20325Not AvailableNegative4657970 - 465843116915.0
peptidase s8AWN73_20340Not AvailablePositive4661211 - 466312169830.3
Trna-lysNot AvailableNot AvailablePositive4663279 - 4663354Not Available
[fefe] hydrogenase h-cluster maturation gtpase hydfAWN73_20350Not AvailableNegative4663523 - 466472544274.4
peptidase a8AWN73_20355Not AvailableNegative4665096 - 466584228632.7

Displaying genes 3931 – 3940 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 247 metabolites

Health Effects

No health effects information available for this bacterium.