Clostridium butyricum strain 300064

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium butyricum strain 300064 is a Gram-positive, anaerobic bacterium primarily found in the rumen of various hosts, including Homo sapiens (humans) and Sus scrofa (domestic pigs). This strain exhibits mesophilic characteristics, indicating that it thrives within moderate temperature ranges typical of mammalian digestive systems. Notably, C. butyricum strain 300064 has a single replicon, which is relevant for its genetic stability and replication dynamics. The strain has been assigned the accession number LRDH00000000.1, which allows for its identification and retrieval in genomic databases. The ecological role of C. butyricum in the rumen is significant, as it contributes to the fermentation processes that are essential for the breakdown of complex carbohydrates and the production of short-chain fatty acids, including butyrate. Butyrate is crucial for the health and energy supply of intestinal cells. Thus, C. butyricum strain 300064 not only plays an important role in the digestive physiology of its hosts but also contributes to the overall microbial ecosystem within the rumen, influencing nutrient availability and gut health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium butyricum
Strainstrain 300064

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatrumen
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium butyricum strain 300064 contig_99, whole genome

Gene Summary

Adenine Count

1662204 bp

Thymine Count

1683454 bp

Guanine Count

657737 bp

Cytosine Count

675987 bp

Genome Length

4679382 bp

Protein-coding Genes

3832 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxyacid dehydrogenaseAWN73_19450Not AvailableNegative4246904 - 424786035731.9
glycogen phosphorylaseAWN73_19455Not AvailableNegative4248142 - 425050290702.1
4-alpha-glucanotransferaseAWN73_19460Not AvailableNegative4250505 - 425199258073.2
laci family transcriptional regulatorAWN73_19465Not AvailableNegative4252030 - 425304037672.3
pucr family transcriptional regulatorAWN73_19470Not AvailableNegative4253429 - 425437336896.3
sugar abc transporter atp-binding proteinAWN73_19475Not AvailableNegative4254423 - 425553241529.5
transglutaminaseAWN73_19480Not AvailableNegative4255860 - 425660029098.0
peptidase m16AWN73_19485Not AvailablePositive4257074 - 425831847961.2
recombinase recxAWN73_19490Not AvailablePositive4258334 - 425897224918.1
transglutaminaseAWN73_19495Not AvailablePositive4259045 - 425972225110.8

Displaying genes 3601 – 3610 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 247 metabolites

Health Effects

No health effects information available for this bacterium.