Clostridium butyricum strain 300064

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium butyricum strain 300064 is a Gram-positive, anaerobic bacterium primarily found in the rumen of various hosts, including Homo sapiens (humans) and Sus scrofa (domestic pigs). This strain exhibits mesophilic characteristics, indicating that it thrives within moderate temperature ranges typical of mammalian digestive systems. Notably, C. butyricum strain 300064 has a single replicon, which is relevant for its genetic stability and replication dynamics. The strain has been assigned the accession number LRDH00000000.1, which allows for its identification and retrieval in genomic databases. The ecological role of C. butyricum in the rumen is significant, as it contributes to the fermentation processes that are essential for the breakdown of complex carbohydrates and the production of short-chain fatty acids, including butyrate. Butyrate is crucial for the health and energy supply of intestinal cells. Thus, C. butyricum strain 300064 not only plays an important role in the digestive physiology of its hosts but also contributes to the overall microbial ecosystem within the rumen, influencing nutrient availability and gut health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium butyricum
Strainstrain 300064

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatrumen
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium butyricum strain 300064 contig_99, whole genome

Gene Summary

Adenine Count

1662204 bp

Thymine Count

1683454 bp

Guanine Count

657737 bp

Cytosine Count

675987 bp

Genome Length

4679382 bp

Protein-coding Genes

3832 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor rhoAWN73_17015Not AvailablePositive3332008 - 333354358160.8
galactosyldiacylglycerol synthaseAWN73_17020Not AvailableNegative3333579 - 333469142072.3
50s ribosomal protein l31AWN73_17025Not AvailableNegative3334904 - 33351137781.38
thymidine kinaseAWN73_17030Not AvailablePositive3335516 - 333610322345.1
protein-(glutamine-n5) methyltransferaseAWN73_17035Not AvailablePositive3336125 - 333788266245.2
peptide chain release factor 1AWN73_17040Not AvailablePositive3338118 - 333920041090.7
hypothetical proteinAWN73_17045Not AvailablePositive3339315 - 333990223135.1
trna threonylcarbamoyladenosine biosynthesis proteinAWN73_17050Not AvailablePositive3339921 - 334097038496.9
ribose-5-phosphate isomeraseAWN73_17055Not AvailablePositive3340991 - 334144016162.3
uracil phosphoribosyltransferaseAWN73_17060Not AvailablePositive3341579 - 334220822904.2

Displaying genes 2821 – 2830 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 247 metabolites

Health Effects

No health effects information available for this bacterium.