Helicobacter pylori strain UM443R

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM443R is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and presence of flagella. This strain is primarily host-associated, with a broad range of potential hosts, including Homo sapiens, various Aves, and other mammals. It has a single replicon and is classified as free-living, which indicates a certain degree of adaptability within its ecological niche. UM443R thrives optimally at 37°C and is categorized as mesophilic, reflecting its adaptation to the warm environment of the stomach. The bacterium is notable for its pathogenicity in humans, where it is implicated in a variety of gastrointestinal diseases. Health effects associated with this strain include chronic gastric inflammation, peptic ulcer disease, and various forms of gastric cancer, such as gastric adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. Additionally, it contributes to conditions like gastroesophageal reflux disease (GERD) and functional dyspepsia. The presence of Helicobacter pylori in the gastrointestinal tract can lead to significant health complications, including chronic gastritis and ulcers. Its ability to survive and proliferate in the stomach, despite the acidic environment, underscores its ecological niche and pathogenic potential. Understanding the characteristics and impacts of UM443R can provide insights into the mechanisms behind gastric diseases and highlight its role in both human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain UM443R

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain UM443R
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM443R


Gene Summary

Adenine Count

501712 bp

Thymine Count

502524 bp

Guanine Count

309510 bp

Cytosine Count

320957 bp

Genome Length

1634703 bp

Protein-coding Genes

1447 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
microcin abc transporter permeaseAV920_0200045Not AvailableNegative7351 - 839738788.5
tryptophan--trna ligaseAV920_0200055Not AvailableNegative10174 - 1115436758.8
biotin synthaseAV920_0200060Not AvailableNegative11226 - 1194827752.7
preprotein translocase subunit secgAV920_0200065Not AvailablePositive12073 - 1267521780.3
ribosome recycling factorAV920_0200070Not AvailablePositive12675 - 1323220932.1
orotate phosphoribosyltransferaseAV920_0200075Not AvailablePositive13236 - 1384121961.9
rdd family proteinAV920_0200080Not AvailablePositive13831 - 1429517957.6
nad-dependent deacylaseAV920_0200085Not AvailablePositive14292 - 1498125968.3
nadh dehydrogenaseAV920_0200090Not AvailablePositive15084 - 1548515647.8
nadh dehydrogenaseAV920_0200095Not AvailablePositive15485 - 1596417809.8

Displaying genes 11 – 20 of 1489 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total