Micrococcus luteus strain NDB3Y10

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Micrococcus

Description

Micrococcus luteus strain NDB3Y10 is a Gram-positive, non-motile cocci bacterium that typically arranges itself in tetrads. This strain is classified as an aerobe, requiring oxygen for its metabolic processes. It thrives optimally at a temperature of 29°C and falls within the mesophilic temperature range. The strain has a single replicon and a single membrane, indicating its relatively simple cellular structure. It is free-living, establishing a biotic relationship with various environments, including human hosts (Homo sapiens) and plants such as wheat (Triticum aestivum). Notably, M. luteus NDB3Y10 is associated with several health concerns in humans, including bacteremia, peritonitis, infections related to peritoneal dialysis, sepsis, and osteoarthritis, particularly knee osteoarthritis. The pathogenicity of M. luteus NDB3Y10 underscores its potential impact on human health, particularly in immunocompromised individuals or those with underlying health conditions. Its ability to inhabit diverse environments, coupled with its association with significant health issues, highlights the ecological adaptability of this strain. Understanding the characteristics and behaviors of M. luteus NDB3Y10 can provide insights into managing infections and the ecological roles of bacteria in both human health and environmental contexts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusMicrococcus
SpeciesMicrococcus luteus
Strainstrain NDB3Y10

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Micrococcus luteus strain NDB3Y10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Lasius niger
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Micrococcus luteus strain NDB3Y10 AU359_contig000084, whole genome

Gene Summary

Adenine Count

337845 bp

Thymine Count

337284 bp

Guanine Count

910905 bp

Cytosine Count

911478 bp

Genome Length

2497512 bp

Protein-coding Genes

2274 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-2-dehydro-3-deoxyheptonate aldolaseAU359_00411P80574Negative443240 - 44465251648.8
1-acyl-sn-glycerol-3-phosphate acyltransferaseAU359_00412Not AvailableNegative444724 - 44543125546.9
thermostable monoacylglycerol lipaseAU359_00413P82597Positive445500 - 44627026732.6
long-chain-fatty-acid--coa ligase fadd15AU359_00414B2HGV4Positive446386 - 44822166067.6
mycothione reductaseAU359_00415P9WHH2Negative448284 - 44974752045.6
2-oxoglutarate carboxylase small subunitAU359_00416P11154Negative449830 - 453348126084.0
putative hth-type transcriptional regulatorAU359_00417P9WME4Negative453524 - 45408719927.7
hypothetical proteinAU359_00418P9WLR4Negative454299 - 45481418034.6
putative hth-type transcriptional regulatorAU359_00419P9WME6Negative454807 - 45555026670.8
glycogen accumulation regulator garaAU359_00420P9WJA8Negative455563 - 45598815443.1

Displaying genes 411 – 420 of 2326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

211 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 211 metabolites

Health Effects

Health ConditionRelationReference
Peritoneal dialysis infectionCausesPMC10292988
BacteremiaCausesPMC10292988
PeritonitisCausesPMC10292988
OaCausesPMC12866835
Knee oaCausesPMC12866835
SepsisCausesPMC12866835

Displaying health effects 1 – 6 of 6 in total