bacterium F083

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Genus

Candidatus Hemicellulosilyticus

Description

Bacterium F083 is characterized by having a single replicon, indicating a simplified genomic structure that may influence its replication and maintenance processes. The specific accession number for this bacterium is LPNF00000000.1, which serves as a unique identifier in genomic databases for further research and analysis. The presence of a single replicon can suggest a streamlined metabolic capability and may reflect an adaptation to specific ecological niches. Such organisms often exhibit traits that allow them to thrive in particular environments, potentially leading to specialized functions that contribute to the local microbial community dynamics. Understanding the genomic organization of F083 could provide insights into its evolutionary history and ecological role. The single replicon might indicate a lack of plasmids, which could affect the bacterium's ability to acquire and exchange genetic material with other microorganisms. This trait could influence its resilience to environmental changes and its capacity to adapt to new challenges. In summary, the bacterium F083, with its single replicon and unique genomic identifier, represents a potentially specialized organism within its habitat. Further investigation into its ecological interactions could reveal important information about its role in microbial communities and its potential applications in biotechnology or environmental science.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: bacterium F083 isolate F083 scaffold_436, whole genome

Gene Summary

Adenine Count

884741 bp

Thymine Count

879044 bp

Guanine Count

972227 bp

Cytosine Count

949128 bp

Genome Length

3687489 bp

Protein-coding Genes

3306 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane proteinF083_1192Not AvailableNegative1429002 - 142948118274.8
outer membrane proteinF083_1193Not AvailableNegative1429573 - 143021423835.2
outer membrane proteinF083_1194Q2NRL5Negative1430231 - 143281997192.5
isoprenyl transferaseF083_1195Q8A1E0Negative1432911 - 143365428951.5
hypothetical proteinF083_1196Not AvailableNegative1433681 - 143454431343.4
hypothetical proteinF083_1197Not AvailableNegative1434554 - 143557639047.2
dihydroflavonol-4-reductaseF083_1198Not AvailableNegative1435644 - 143662435307.2
pdk repeat-containing proteinF083_1199Not AvailableNegative1436714 - 1441921186864.0
fibronectin type iii domain-containing proteinF083_1200Not AvailableNegative1441974 - 144303837773.6
ditp/xtp pyrophosphataseF083_1201P0AEY4Negative1445438 - 144615426855.7

Displaying genes 1221 – 1230 of 3367 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

121 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001330N-acetyl-D-hexosamineC8H15NO6Chemical structure of N-acetyl-D-hexosamineNot available
Average221.209Da
Monoisotopic221.089937207Da

Displaying 1–10 of 121 metabolites

Health Effects

No health effects information available for this bacterium.