Burkholderia ubonensis strain MSMB2087WGS

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia ubonensis strain MSMB2087WGS is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number LPHD00000000.1, which serves as a reference for genomic studies and facilitates data retrieval. As a member of the Burkholderia genus, this strain is likely to exhibit traits typical of the group, including environmental versatility and potential biotechnological applications. Burkholderia species are known for their ability to thrive in diverse habitats and can be associated with both beneficial and pathogenic roles in various ecosystems. The genomic data available for Burkholderia ubonensis strain MSMB2087WGS could provide insights into its metabolic capabilities and ecological interactions. Understanding the genetic composition of this strain may reveal its potential functions in biodegradation or nutrient cycling, contributing to ecosystem health. Additionally, the single replicon structure may suggest a level of simplicity that could be advantageous for specific applications in environmental microbiology or bioremediation efforts. In summary, while the specific traits of Burkholderia ubonensis strain MSMB2087WGS are limited to its replicon count and accession information, the implications of its genomic characteristics hint at its ecological relevance and potential utility in various biological contexts. Further studies would be necessary to elucidate its functional roles and contributions to the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia ubonensis
Strainstrain MSMB2087WGS

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia ubonensis strain MSMB2087WGS MSMB2087WGS_99, whole

Gene Summary

Adenine Count

1366235 bp

Thymine Count

1357210 bp

Guanine Count

2704076 bp

Cytosine Count

2724168 bp

Genome Length

8151689 bp

Protein-coding Genes

6942 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorWL29_34695P30864Negative5363769 - 536465332567.4
mfs transporterWL29_34700P9WG90Positive5364802 - 536635252101.6
hypothetical proteinWL29_34705Not AvailablePositive5366542 - 536700917128.3
aldehyde dehydrogenaseWL29_34710P46368Positive5367224 - 536875055654.9
arac family transcriptional regulatorWL29_34720Q9ZFU7Positive5369192 - 537022337740.0
adp-heptose--lps heptosyltransferaseWL29_34725Not AvailableNegative5370270 - 537131937180.7
thiamine pyrophosphate-binding proteinWL29_34730P0DP90Negative5371336 - 537303961076.2
abrb family transcriptional regulatorWL29_34735Not AvailablePositive5373191 - 53734278884.43
serine dehydrataseWL29_34740Not AvailableNegative5373461 - 537484948655.6
alginate lyaseWL29_34745Not AvailableNegative5374878 - 537602041913.1

Displaying genes 4841 – 4850 of 7094 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

377 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 377 metabolites

Health Effects

No health effects information available for this bacterium.