Burkholderia cepacia strain MSMB1302 MSMB1302_99

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia cepacia strain MSMB1302 (accession LOYH00000000.1) is a Gram-negative microaerophilic bacterium primarily found in the rhizosphere. This strain is notable for its interactions with a range of hosts, including Homo sapiens, Viridiplantae, Anura, and Allium cepa. In humans, B. cepacia is associated with serious health effects, notably pneumonia and infective endocarditis, including native valve endocarditis. This highlights its potential pathogenicity, particularly in immunocompromised individuals or those with underlying health conditions. The strain’s ability to thrive in the rhizosphere suggests a role in plant-microbe interactions, which could be beneficial or detrimental to plant health, depending on the context of the interaction. The single replicon characteristic of MSMB1302 indicates a simpler genomic structure, which may influence its adaptability and survival in various environments. The microaerophilic nature of this strain implies that it requires a reduced level of oxygen for growth, further influencing its ecological niche and interactions within the rhizosphere. Understanding the ecological role of Burkholderia cepacia strain MSMB1302 in the rhizosphere can provide insights into its dual nature as both a potential pathogen in humans and a participant in plant-microbe interactions. This could have implications for agricultural practices and health outcomes, given its presence in both plant and human hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia cepacia
Strainstrain MSMB1302 MSMB1302_99

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Burkholderia cepacia strain MSMB1302 MSMB1302_99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Anura
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia cepacia strain MSMB1302 MSMB1302_99


Gene Summary

Adenine Count

1429287 bp

Thymine Count

1427672 bp

Guanine Count

2873678 bp

Cytosine Count

2876507 bp

Genome Length

8607144 bp

Protein-coding Genes

7408 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive12 - 2905Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive43 - 1578Not Available
hypothetical proteinWS90_03765Not AvailablePositive83 - 91631517.5
5s ribosomal rnaNot AvailableNot AvailablePositive93 - 205Not Available
hypothetical proteinWS90_03770Not AvailableNegative1364 - 15617245.09
transposaseWS90_03775Q9HI37Positive1595 - 253034590.1
5s ribosomal rnaNot AvailableNot AvailablePositive3057 - 3169Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive3717 - 3829Not Available
xre family transcriptional regulatorWS90_03780Not AvailableNegative3593 - 393412746.2
hypothetical proteinWS90_03785Not AvailablePositive3958 - 445218188.8

Displaying genes 1 – 10 of 7476 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

791 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da

Displaying 1–10 of 791 metabolites

Health Effects

Health ConditionRelationReference
Infective endocarditisCausesPMC3112426
Native valve endocarditisCausesPMC3112426
PneumoniaCausesPMC9294674

Displaying health effects 1 – 3 of 3 in total