Haloferax marisrubri strain SB3

RodMotileaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Haloferax

Description

Haloferax marisrubri strain SB3 is a halophilic archaeon isolated from the Red Sea. This organism exhibits a rod shape and is characterized as Gram-negative. It is aerobic, requiring oxygen for its metabolic processes. H. marisrubri strain SB3 is motile, possessing flagella that facilitate its movement in its saline environment. The optimal growth temperature for this strain is 37 degrees Celsius, which suggests a preference for warm aquatic habitats typical of its natural setting in the Red Sea. This strain is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in extreme conditions. The accession number for H. marisrubri strain SB3 is LOPW00000000.2, which provides a reference for genetic and genomic studies. The presence of H. marisrubri strain SB3 in the Red Sea highlights the diverse microbial life that thrives in extreme saline environments. Its adaptations, such as aerobic metabolism and motility, suggest ecological roles in nutrient cycling and interactions with other microbial communities in hyper-saline waters. Understanding such organisms is crucial for insights into microbial diversity and the potential applications of extremophiles in biotechnology and environmental management.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHaloferax
SpeciesHaloferax marisrubri
Strainstrain SB3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Haloferax marisrubri strain SB3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangeNot Available
HabitatRed Sea
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Haloferax marisrubri strain SB3 scf100025, whole genome shotgun

Gene Summary

Adenine Count

669872 bp

Thymine Count

670135 bp

Guanine Count

1280858 bp

Cytosine Count

1280775 bp

Genome Length

3904985 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAUR65_006635Not AvailablePositive1291264 - 129185721591.0
phytoene dehydrogenaseAUR65_006640Not AvailablePositive1291987 - 129366060852.4
pyridoxamine 5'-phosphate oxidase family proteinAUR65_006645Not AvailablePositive1293736 - 129463833523.6
tetr/acrr family transcriptional regulatorAUR65_006650Not AvailableNegative1294921 - 129554123141.1
hypothetical proteinAUR65_006655Not AvailableNegative1295665 - 129595210051.8
3-oxoacyl-acp reductaseAUR65_006660Not AvailableNegative1295956 - 129678928737.3
transcriptional regulatorAUR65_006665Not AvailableNegative1296937 - 129802539107.3
phosphate abc transporter atp-binding proteinAUR65_006670Q5V0G3Negative1298256 - 129920334441.9
phosphate abc transporter, permease protein pstaAUR65_006675P46340Negative1299206 - 130082855541.5
phosphate abc transporter permease subunit pstcAUR65_006680Not AvailableNegative1300828 - 130196139502.6

Displaying genes 1321 – 1330 of 3795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

218 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 218 metabolites

Health Effects

No health effects information available for this bacterium.