Xanthomonas campestris pv. vitiscarnosae strain LMG939

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas campestris pv. vitiscarnosae strain LMG939 is a Gram-negative, rod-shaped bacterium that is classified as an aerobe and exhibits mobility due to the presence of flagella. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. It possesses a single replicon and is characterized by having two membranes typical of Gram-negative bacteria. This bacterium is free-living and is primarily associated with various hosts within the Viridiplantae kingdom. Notable host plants include Brassica oleracea var. capitata (cabbage), Solanum tuberosum (potato), Oryza sativa (rice), and several varieties of Brassica and Raphanus sativus (radish), among others. Xanthomonas campestris pv. vitiscarnosae is known for its pathogenicity, particularly affecting plants and causing significant agricultural issues. It is implicated in diseases such as leaf-blight disease, bacterial blight of stock, and bacterial leaf spot. These health effects can lead to reduced crop yields and economic losses in affected plant species. In summary, X. campestris pv. vitiscarnosae strain LMG939 plays a crucial role in plant health and agriculture, highlighting the importance of understanding bacterial pathogens in managing crop diseases and maintaining plant productivity. The interactions between this bacterium and its diverse plant hosts illustrate the complex relationships within ecosystems and the potential challenges they pose to agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strainpv. vitiscarnosae strain LMG939

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. vitiscarnosae strain LMG939
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Viridiplantae, Brassica oleracea var. capitata, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Xanthomonas campestris pv. vitiscarnosae strain LMG939 contig_99,

Gene Summary

Adenine Count

889179 bp

Thymine Count

898632 bp

Guanine Count

1643863 bp

Cytosine Count

1630586 bp

Genome Length

5062260 bp

Protein-coding Genes

3991 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dolichyl-phosphate-mannose--protein mannosyltransferaseXvtr_01905Not AvailableNegative3389153 - 339087464321.8
16s rrna methyltransferaseXvtr_01910Not AvailableNegative3390925 - 339223546965.2
methionyl-trna formyltransferaseXvtr_01915Not AvailableNegative3392235 - 339315832712.8
peptide deformylaseXvtr_01920Not AvailableNegative3393559 - 339407119131.2
peptidoglycan-binding protein lysmXvtr_01925Not AvailablePositive3394203 - 339533941230.0
dna processing protein dpraXvtr_01930Not AvailablePositive3395411 - 339655639733.5
hypothetical proteinXvtr_01935Not AvailablePositive3396599 - 339707218130.5
pilus assembly protein pilaXvtr_01940Not AvailablePositive3397113 - 339783525694.5
rdd family proteinXvtr_01945Not AvailablePositive3397877 - 339914543774.1
dna topoisomerase iXvtr_01950Not AvailablePositive3399328 - 340182091992.8

Displaying genes 2791 – 2800 of 4112 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

268 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 268 metabolites

Health Effects

Health ConditionRelationReference
Leaf-blight diseaseCausesPMC5100339
Bacterial blight of stockCausesPMC4652430
Bacterial leaf spotCausesPMC4652430

Displaying health effects 1 – 3 of 3 in total