Xanthomonas axonopodis pv. melhusii strain LMG9050

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas axonopodis pv. melhusii strain LMG9050 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This strain is known to harbor a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The primary host for X. axonopodis pv. melhusii is Solanum lycopersicum, commonly known as the tomato plant. This bacterium is pathogenic to tomatoes, causing a condition known as bacterial spot. This disease is characterized by the development of lesions on the leaves and stems of tomato plants, which can lead to reduced yield and quality of the fruit. The genetic sequence of this strain is cataloged under the accession number LOJW00000000.1, providing a reference for further research and understanding of its pathogenic mechanisms. Given the economic significance of tomatoes in agriculture, studying X. axonopodis pv. melhusii strain LMG9050 is crucial for developing management strategies to mitigate the impact of bacterial spot on tomato crops. In summary, the rod-shaped Xanthomonas axonopodis pv. melhusii strain LMG9050 is a flagellated bacterium that poses a threat to tomato cultivation by causing bacterial spot disease. Its specific host interaction highlights the need for targeted agricultural practices to reduce the detrimental effects of this pathogen on crop health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas axonopodis
Strainpv. melhusii strain LMG9050

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas axonopodis pv. melhusii strain LMG9050
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas axonopodis pv. melhusii strain LMG9050 contig_99,

Gene Summary

Adenine Count

895293 bp

Thymine Count

895863 bp

Guanine Count

1640738 bp

Cytosine Count

1648945 bp

Genome Length

5080839 bp

Protein-coding Genes

4050 genes

Non-Coding Genes

115 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional isocitrate dehydrogenase kinase/phosphataseXmlh_03560Not AvailableNegative2452561 - 245430066731.8
biotin transporter bioyXmlh_03565Not AvailableNegative2454297 - 245524434464.4
hypothetical proteinXmlh_03570Not AvailablePositive2455346 - 24556069641.66
isocitrate dehydrogenaseXmlh_03575Not AvailableNegative2455678 - 245790980285.4
hypothetical proteinXmlh_03580Not AvailablePositive2458111 - 245981163671.3
crispr-associated protein cas3Xmlh_03585Not AvailablePositive2459975 - 246226985217.0
type i-c crispr-associated protein cas5Xmlh_03590Not AvailablePositive2462356 - 246303024914.8
type i-c crispr-associated protein cas8c/csd1Xmlh_03595Not AvailablePositive2463027 - 246489567742.0
type i-c crispr-associated protein cas7/csd2Xmlh_03600Not AvailablePositive2464892 - 246575832349.6
crispr-associated protein cas4Xmlh_03605Not AvailablePositive2465778 - 246641023892.6

Displaying genes 2061 – 2070 of 4165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519

Displaying health effects 1 – 1 of 1 in total