Vibrio cidicii strain 2538-88

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium that inhabits marine environments. This strain is characterized by having a single replicon, which is significant in its genetic organization and replication processes. The presence of only one replicon may influence its adaptability and metabolic capabilities in the marine ecosystem. As a member of the Vibrio genus, strain 2538-88 is likely to possess traits associated with marine bacteria, such as the ability to thrive in saltwater and potentially play a role in nutrient cycling within its habitat. The ecological interactions of Vibrio species often include participation in the decomposition of organic matter, which can contribute to the health and function of marine ecosystems. The genomic data for Vibrio cidicii strain 2538-88 is cataloged under the accession number LOBR00000000.1, allowing for further study and comparison with other Vibrio species. This genomic information can provide insights into the metabolic pathways and ecological roles that this strain may fulfill in marine environments. Overall, Vibrio cidicii strain 2538-88 exemplifies the diversity of microbial life in the ocean and underscores the importance of studying marine bacteria to understand their contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cidicii
Strainstrain 2538-88

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio cidicii strain 2538-88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio cidicii strain 2538-88 Contig_99, whole genome shotgun

Gene Summary

Adenine Count

1202253 bp

Thymine Count

1198130 bp

Guanine Count

1089160 bp

Cytosine Count

1123769 bp

Genome Length

4619449 bp

Protein-coding Genes

3950 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exopolysaccharide biosynthesis proteinATY37_13780Not AvailableNegative1163872 - 116488539025.1
udp-glucose 6-dehydrogenaseATY37_13785Not AvailablePositive1165229 - 116639543437.0
utp--glucose-1-phosphate uridylyltransferaseATY37_13790Not AvailablePositive1166934 - 116775530337.6
hypothetical proteinATY37_13795Not AvailablePositive1168446 - 117055179471.3
udp-glucose 4-epimeraseATY37_13800Not AvailableNegative1170906 - 117191636863.8
udp-glucose 6-dehydrogenaseATY37_13805Not AvailablePositive1172128 - 117329443456.1
triose-phosphate isomeraseATY37_13810Not AvailableNegative1173398 - 117416827015.2
5-carboxymethyl-2-hydroxymuconate isomeraseATY37_13815Not AvailablePositive1174470 - 117481713156.7
hypothetical proteinATY37_13820Not AvailableNegative1174919 - 117525712795.5
hypothetical proteinATY37_13825Not AvailableNegative1175604 - 117636827964.9

Displaying genes 981 – 990 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.