Vibrio cidicii strain 2538-88

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium that inhabits marine environments. This strain is characterized by having a single replicon, which is significant in its genetic organization and replication processes. The presence of only one replicon may influence its adaptability and metabolic capabilities in the marine ecosystem. As a member of the Vibrio genus, strain 2538-88 is likely to possess traits associated with marine bacteria, such as the ability to thrive in saltwater and potentially play a role in nutrient cycling within its habitat. The ecological interactions of Vibrio species often include participation in the decomposition of organic matter, which can contribute to the health and function of marine ecosystems. The genomic data for Vibrio cidicii strain 2538-88 is cataloged under the accession number LOBR00000000.1, allowing for further study and comparison with other Vibrio species. This genomic information can provide insights into the metabolic pathways and ecological roles that this strain may fulfill in marine environments. Overall, Vibrio cidicii strain 2538-88 exemplifies the diversity of microbial life in the ocean and underscores the importance of studying marine bacteria to understand their contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cidicii
Strainstrain 2538-88

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio cidicii strain 2538-88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio cidicii strain 2538-88 Contig_99, whole genome shotgun

Gene Summary

Adenine Count

1202253 bp

Thymine Count

1198130 bp

Guanine Count

1089160 bp

Cytosine Count

1123769 bp

Genome Length

4619449 bp

Protein-coding Genes

3950 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-54 factorATY37_06205Not AvailableNegative3373993 - 337545654658.5
lps export abc transporter atp-binding proteinATY37_06210Not AvailableNegative3375506 - 337623126877.6
lipopolysaccharide transport periplasmic protein lptaATY37_06215Not AvailableNegative3376233 - 337672717936.2
lps export abc transporter periplasmic protein lptcATY37_06220Not AvailableNegative3376813 - 337728717941.3
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseATY37_06225Not AvailableNegative3377284 - 337784120266.6
d-arabinose 5-phosphate isomeraseATY37_06230Not AvailableNegative3377841 - 337881234534.4
calcium:proton antiporterATY37_06235Not AvailableNegative3378834 - 337979933606.4
abc transporter atp-binding proteinATY37_06240Not AvailablePositive3380115 - 338091829412.8
abc transporter permeaseATY37_06245Not AvailablePositive3380911 - 338169927887.9
outer membrane lipid asymmetry maintenance protein mladATY37_06250Not AvailablePositive3381702 - 338219017558.2

Displaying genes 2881 – 2890 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.