Vibrio cidicii strain 2538-88

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium that inhabits marine environments. This strain is characterized by having a single replicon, which is significant in its genetic organization and replication processes. The presence of only one replicon may influence its adaptability and metabolic capabilities in the marine ecosystem. As a member of the Vibrio genus, strain 2538-88 is likely to possess traits associated with marine bacteria, such as the ability to thrive in saltwater and potentially play a role in nutrient cycling within its habitat. The ecological interactions of Vibrio species often include participation in the decomposition of organic matter, which can contribute to the health and function of marine ecosystems. The genomic data for Vibrio cidicii strain 2538-88 is cataloged under the accession number LOBR00000000.1, allowing for further study and comparison with other Vibrio species. This genomic information can provide insights into the metabolic pathways and ecological roles that this strain may fulfill in marine environments. Overall, Vibrio cidicii strain 2538-88 exemplifies the diversity of microbial life in the ocean and underscores the importance of studying marine bacteria to understand their contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cidicii
Strainstrain 2538-88

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio cidicii strain 2538-88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio cidicii strain 2538-88 Contig_99, whole genome shotgun

Gene Summary

Adenine Count

1202253 bp

Thymine Count

1198130 bp

Guanine Count

1089160 bp

Cytosine Count

1123769 bp

Genome Length

4619449 bp

Protein-coding Genes

3950 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts sorbitol transporter subunit iibATY37_00245Not AvailablePositive2675788 - 267677134515.3
pts glucitol/sorbitol transporter subunit iiaATY37_00250Not AvailablePositive2676784 - 267714613085.7
sorbitol-6-phosphate 2-dehydrogenaseATY37_00255Not AvailablePositive2677199 - 267797828213.9
transcriptional regulatorATY37_00260Not AvailablePositive2678074 - 267843013114.3
transcriptional regulatorATY37_00265Not AvailablePositive2678512 - 267928828056.2
pts glucitol/sorbitol transporter subunit iicATY37_00270Not AvailablePositive2679493 - 268005920642.3
pts sorbitol transporter subunit iibATY37_00275Not AvailablePositive2680056 - 268102734128.1
pts sorbitol transporter subunit iiaATY37_00280Not AvailablePositive2681034 - 268139012921.5
fmn-binding protein miocATY37_00285Not AvailablePositive2681569 - 268200615773.6
trna uridine 5-carboxymethylaminomethyl modification proteinATY37_00290Not AvailablePositive2682476 - 268437470353.2

Displaying genes 2291 – 2300 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.