Vibrio cidicii strain 2538-88

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium that inhabits marine environments. This strain is characterized by having a single replicon, which is significant in its genetic organization and replication processes. The presence of only one replicon may influence its adaptability and metabolic capabilities in the marine ecosystem. As a member of the Vibrio genus, strain 2538-88 is likely to possess traits associated with marine bacteria, such as the ability to thrive in saltwater and potentially play a role in nutrient cycling within its habitat. The ecological interactions of Vibrio species often include participation in the decomposition of organic matter, which can contribute to the health and function of marine ecosystems. The genomic data for Vibrio cidicii strain 2538-88 is cataloged under the accession number LOBR00000000.1, allowing for further study and comparison with other Vibrio species. This genomic information can provide insights into the metabolic pathways and ecological roles that this strain may fulfill in marine environments. Overall, Vibrio cidicii strain 2538-88 exemplifies the diversity of microbial life in the ocean and underscores the importance of studying marine bacteria to understand their contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cidicii
Strainstrain 2538-88

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio cidicii strain 2538-88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio cidicii strain 2538-88 Contig_99, whole genome shotgun

Gene Summary

Adenine Count

1202253 bp

Thymine Count

1198130 bp

Guanine Count

1089160 bp

Cytosine Count

1123769 bp

Genome Length

4619449 bp

Protein-coding Genes

3950 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease v subunit alphaATY37_19175Not AvailablePositive2432390 - 243450476826.7
exonuclease v subunit gammaATY37_19180Not AvailableNegative2434570 - 24347527061.53
n-acetylglutamate synthaseATY37_19185Not AvailableNegative2434973 - 243631048836.1
n-acetylglutamate synthaseATY37_19190Not AvailablePositive2436455 - 243692818087.9
murein transglycosylaseATY37_19195Not AvailablePositive2437047 - 243815040357.1
sulfur acceptor protein csdlATY37_19200Not AvailablePositive2438233 - 243904229312.3
fe-s metabolism protein sufeATY37_19205Not AvailablePositive2439083 - 243951716020.2
cysteine sulfinate desulfinaseATY37_19210Not AvailableNegative2439642 - 244085343813.3
oxidative-stress-resistance chaperoneATY37_19215Not AvailableNegative2440853 - 244145221740.6
2-dehydropantoate 2-reductaseATY37_19220Not AvailableNegative2441449 - 244234232506.2

Displaying genes 2081 – 2090 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.