Vibrio cidicii strain 2538-88

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium that inhabits marine environments. This strain is characterized by having a single replicon, which is significant in its genetic organization and replication processes. The presence of only one replicon may influence its adaptability and metabolic capabilities in the marine ecosystem. As a member of the Vibrio genus, strain 2538-88 is likely to possess traits associated with marine bacteria, such as the ability to thrive in saltwater and potentially play a role in nutrient cycling within its habitat. The ecological interactions of Vibrio species often include participation in the decomposition of organic matter, which can contribute to the health and function of marine ecosystems. The genomic data for Vibrio cidicii strain 2538-88 is cataloged under the accession number LOBR00000000.1, allowing for further study and comparison with other Vibrio species. This genomic information can provide insights into the metabolic pathways and ecological roles that this strain may fulfill in marine environments. Overall, Vibrio cidicii strain 2538-88 exemplifies the diversity of microbial life in the ocean and underscores the importance of studying marine bacteria to understand their contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cidicii
Strainstrain 2538-88

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio cidicii strain 2538-88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio cidicii strain 2538-88 Contig_99, whole genome shotgun

Gene Summary

Adenine Count

1202253 bp

Thymine Count

1198130 bp

Guanine Count

1089160 bp

Cytosine Count

1123769 bp

Genome Length

4619449 bp

Protein-coding Genes

3950 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosome replication initiation inhibitor proteinATY37_18025Not AvailablePositive2161775 - 216267133648.5
hypothetical proteinATY37_18030Not AvailablePositive2162778 - 216347325219.7
d-3-phosphoglycerate dehydrogenaseATY37_18035Not AvailableNegative2163541 - 216477044455.5
ribose-5-phosphate isomeraseATY37_18040Not AvailableNegative2165030 - 216568622890.6
5-formyltetrahydrofolate cyclo-ligaseATY37_18045Not AvailableNegative2165741 - 216634022834.6
z-ring-associated proteinATY37_18050Not AvailableNegative2166535 - 216684611556.8
hypothetical proteinATY37_18055Not AvailableNegative2166874 - 21670958143.14
hypothetical proteinATY37_18060Not AvailablePositive2167094 - 216766920462.2
2-octaprenyl-6-methoxyphenyl hydroxylaseATY37_18065Not AvailablePositive2167681 - 216885943246.1
2-octaprenylphenol hydroxylaseATY37_18070Not AvailablePositive2168874 - 217009744586.9

Displaying genes 1861 – 1870 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.