Agrobacterium vitis strain NCPPB 3554

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Gillisella

Description

Agrobacterium vitis strain NCPPB 3554 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain has a single replicon and has been identified as a pathogen affecting various hosts, including species from the genus Vitis, such as Vitis vinifera, as well as Ficus benjamina. One of the significant health impacts associated with Agrobacterium vitis is its role in causing crown gall disease, particularly in grapevines. This disease manifests as grapevine crown galls (CGs), which are abnormal growths that can adversely affect the health and yield of the plants. The presence of this pathogen in vineyards is a concern for grape growers, as it can lead to significant economic losses due to compromised plant health. The accession number for Agrobacterium vitis strain NCPPB 3554 is LMVL00000000.2, which provides a reference for further research and analysis. Understanding the pathogenicity and host interactions of this strain is crucial for developing effective management strategies to mitigate the impact of crown gall disease on grapevine crops. This insight underscores the importance of monitoring and controlling Agrobacterium vitis populations in agricultural settings to ensure the health of affected plant species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusGillisella
SpeciesGillisella vitis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium vitis strain NCPPB 3554
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatplant root surfaces
Biotic relationshipNot Available
Host(s)Viridiplantae, Vitis sp., Ficus benjamina
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium vitis strain NCPPB 3554


Gene Summary

Adenine Count

1205873 bp

Thymine Count

1237053 bp

Guanine Count

1678281 bp

Cytosine Count

1633284 bp

Genome Length

5754491 bp

Protein-coding Genes

4999 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive37064 - 37160Not Available
hcp1 family type vi secretion system effectorASB66_000140Not AvailablePositive38092 - 3856817377.3
hypothetical proteinASB66_000145Not AvailablePositive38746 - 3925218593.2
hypothetical proteinASB66_000150Not AvailablePositive39493 - 3990614202.4
protein translocase subunit secdASB66_000155Not AvailablePositive40078 - 4259789357.4
hydroxyacylglutathione hydrolaseASB66_000160Not AvailableNegative42644 - 4404750783.7
sfnb family sulfur acquisition oxidoreductaseASB66_000165Not AvailableNegative44175 - 4541344794.1
dimethyl sulfone monooxygenase sfngASB66_000170Not AvailableNegative45457 - 4656641699.1
transcriptional regulatorASB66_000175Not AvailablePositive46857 - 4719812009.6
arsenate reductase arscASB66_000180Not AvailablePositive47208 - 4774418976.7

Displaying genes 31 – 40 of 5052 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

78 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 78 metabolites

Health Effects

Health ConditionRelationReference
Grapevine crown gallsCausesPMC10745273
CgsCausesPMC10745273
Crown gallCausesPMC10811719
Grapevine crown gallCausesPMC10811719
Crown gall disease of grapevineCausesPMC9219206
Crown gallCausesPMC9219206

Displaying health effects 1 – 6 of 6 in total