Frateuria sp. Soil773

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria sp. Soil773 is characterized by possessing a single replicon, which indicates a streamlined genetic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LMSL00000000.1, which serves as a reference for genomic studies and further characterization. Frateuria species are known for their ecological roles, particularly in soil ecosystems. Although specific metabolic capabilities or ecological functions of Frateuria sp. Soil773 are not detailed in the provided information, the presence of a single replicon often suggests a specialized adaptation to specific environmental niches. This could imply that Frateuria sp. Soil773 may play a significant role in nutrient cycling or soil health. The limited genomic complexity, as indicated by the single replicon, could enable Frateuria sp. Soil773 to efficiently exploit available resources in its habitat, potentially leading to beneficial interactions with other soil microorganisms. Understanding the genetic and ecological roles of Frateuria sp. Soil773 can provide insights into soil microbiomes and their contributions to ecosystem functions. Further research may elucidate its specific interactions within the soil microbiome, shedding light on the importance of such microorganisms in maintaining soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria sp. Soil773
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria sp. Soil773 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

711280 bp

Thymine Count

698326 bp

Guanine Count

1540219 bp

Cytosine Count

1591831 bp

Genome Length

4548162 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferaseASG87_09060Q9I466Negative4335663 - 433618418284.2
cobyric acid synthaseASG87_09065B0RPU7Negative4336172 - 433763851969.4
cobalamin biosynthesis protein cobdASG87_09070A4VJ38Negative4338705 - 433962532047.9
cobyrinic acid a,c-diamide synthaseASG87_09075Q9I471Negative4339828 - 434119247641.9
cob(i)yrinic acid a,c-diamide adenosyltransferaseASG87_09080Q9I472Negative4341189 - 434179122032.4
cobalamin abc transporterASG87_09085Not AvailableNegative4341806 - 434239621181.1
hypothetical proteinASG87_09090Not AvailableNegative4342408 - 434299220845.6
ligand-gated channel proteinASG87_09095A7FD14Negative4343027 - 434492868811.8
atp-dependent chaperone clpbASG87_09100Q8P6A0Negative4345490 - 434808195658.9
trehalose phosphataseASG87_09105P55611Positive4348492 - 434932529568.3

Displaying genes 3571 – 3580 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 231 metabolites

Health Effects

No health effects information available for this bacterium.