Frateuria sp. Soil773

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria sp. Soil773 is characterized by possessing a single replicon, which indicates a streamlined genetic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LMSL00000000.1, which serves as a reference for genomic studies and further characterization. Frateuria species are known for their ecological roles, particularly in soil ecosystems. Although specific metabolic capabilities or ecological functions of Frateuria sp. Soil773 are not detailed in the provided information, the presence of a single replicon often suggests a specialized adaptation to specific environmental niches. This could imply that Frateuria sp. Soil773 may play a significant role in nutrient cycling or soil health. The limited genomic complexity, as indicated by the single replicon, could enable Frateuria sp. Soil773 to efficiently exploit available resources in its habitat, potentially leading to beneficial interactions with other soil microorganisms. Understanding the genetic and ecological roles of Frateuria sp. Soil773 can provide insights into soil microbiomes and their contributions to ecosystem functions. Further research may elucidate its specific interactions within the soil microbiome, shedding light on the importance of such microorganisms in maintaining soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria sp. Soil773
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria sp. Soil773 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

711280 bp

Thymine Count

698326 bp

Guanine Count

1540219 bp

Cytosine Count

1591831 bp

Genome Length

4548162 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asparagine--trna ligaseASG87_04475Q87A82Positive3239975 - 324139052499.4
hypothetical proteinASG87_04480Not AvailablePositive3241404 - 324219528473.7
hypothetical proteinASG87_04485Not AvailablePositive3242192 - 324252112995.2
short-chain dehydrogenaseASG87_04490Q9KQH7Positive3242547 - 324333826698.0
2-hydroxymuconic semialdehyde dehydrogenaseASG87_04495Q0P5F9Positive3243406 - 324487251499.7
carbonate dehydrataseASG87_04500P61517Positive3244883 - 324554524430.3
2-aminomuconate deaminaseASG87_04505Q9KWS2Positive3245542 - 324597014924.9
hypothetical proteinASG87_04510Not AvailableNegative3246034 - 32462466813.13
n-formylglutamate deformylaseASG87_04515Q9HU92Negative3246444 - 324722928839.1
glutathione reductaseASG87_04520D0VWY5Negative3247253 - 324859647788.1

Displaying genes 2671 – 2680 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 231 metabolites

Health Effects

No health effects information available for this bacterium.