Sphingomonas sp. Leaf412

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf412 is characterized as a rod-shaped bacterium, exhibiting the presence of flagella, which suggests motility. This species is notable for having a single replicon, indicating a streamlined genomic structure that could influence its adaptability and replication efficiency. The accession number for Sphingomonas sp. Leaf412 is LMQP00000000.1, which allows for further genomic investigation and data retrieval from relevant databases. The presence of a single replicon may suggest that this bacterium has a simpler genomic organization compared to other species within the Sphingomonas genus, which can often exhibit more complex genomic traits. In an ecological context, Sphingomonas species, including Leaf412, are often associated with various environments, including soil and plant surfaces. Their motility, facilitated by flagella, could enhance their ability to colonize diverse niches and interact with other microorganisms. This trait may contribute to their role in biogeochemical cycling, particularly in the degradation of organic compounds. Overall, Sphingomonas sp. Leaf412 presents interesting features that highlight its potential ecological significance, particularly in nutrient cycling and plant-microbe interactions. The simple genomic structure and motility may confer advantages in various environmental contexts, underscoring the importance of understanding microbial diversity for ecological and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf412
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf412
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf412 contig_5, whole genome shotgun sequence.

Gene Summary

Adenine Count

527436 bp

Thymine Count

528707 bp

Guanine Count

1199989 bp

Cytosine Count

1196593 bp

Genome Length

3462693 bp

Protein-coding Genes

3084 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
vgr related proteinASG29_09425Q9I6M7Negative2039199 - 203966617399.1
Trna-leuNot AvailableNot AvailablePositive2039773 - 2039859Not Available
3-beta hydroxysteroid dehydrogenaseASG29_09435Q9SK66Positive2039964 - 204088732226.0
udp-diphosphataseASG29_09440Q2G3F4Positive2040897 - 204169727988.1
dihydropyrimidine dehydrogenaseASG29_09445Q05756Positive2041851 - 204329952241.0
hypothetical proteinASG29_09450Not AvailablePositive2043296 - 204359210971.0
hypothetical proteinASG29_09455Not AvailablePositive2043589 - 204408018544.4
hypothetical proteinASG29_09460Not AvailablePositive2044099 - 204469821075.4
glutamate synthaseASG29_09465Q05755Positive2044695 - 2049209162964.0
hypothetical proteinASG29_09470P0A653Negative2049302 - 204969713695.5

Displaying genes 1831 – 1840 of 3134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

267 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00004573,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dioneC19H24O4Chemical structure of 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dioneNot available
Average316.3915Da
Monoisotopic316.1674593Da

Displaying 1–10 of 267 metabolites

Health Effects

No health effects information available for this bacterium.