Rhizobium sp. Leaf371

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Leaf371 is a rod-shaped bacterium notable for its motility, as it possesses flagella. This characteristic is significant for its ability to navigate through soil environments, which can enhance its interactions with host plants. The bacterium has a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in replication and metabolic processes. The genetic information for Rhizobium sp. Leaf371 is cataloged under the accession number LMQB00000000.1, providing a reference for further genomic studies and potential applications in agricultural microbiology. This species is part of the broader Rhizobium genus, which is well-known for its symbiotic relationships with legumes. These relationships are crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form usable by plants, thereby enriching soil fertility and promoting sustainable agricultural practices. The specific traits of Rhizobium sp. Leaf371, including its motility and genomic organization, may play a role in its efficiency in forming nodules on legume roots, which is essential for its ecological function in nitrogen cycling within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Leaf371
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Leaf371
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Leaf371 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

921660 bp

Thymine Count

930695 bp

Guanine Count

1623764 bp

Cytosine Count

1609567 bp

Genome Length

5085900 bp

Protein-coding Genes

4401 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxamine 5'-phosphate oxidaseASG39_08540Not AvailableNegative2697650 - 269806615354.0
lysine decarboxylaseASG39_08545Not AvailableNegative2698154 - 269905333054.6
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseASG39_08550C3MF35Positive2699220 - 270007730223.2
histidine kinaseASG39_08555Not AvailableNegative2700104 - 270125541956.6
aldo/keto reductaseASG39_08560Not AvailableNegative2701374 - 270241437936.3
cation transporterASG39_08565Q8R4H9Negative2702532 - 270353335972.9
transcriptional regulatorASG39_08570P55757Negative2703530 - 270380810197.2
succinyl-diaminopimelate desuccinylaseASG39_08575Q92SH1Positive2703924 - 270517443629.6
hypothetical proteinASG39_08580Not AvailablePositive2705161 - 270576021605.5
pseudouridine synthaseASG39_08585Q8UIC9Negative2705770 - 270652527884.1

Displaying genes 2341 – 2350 of 4462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

279 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 279 metabolites

Health Effects

No health effects information available for this bacterium.