Geodermatophilus sp. Leaf369

Cocci

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus sp. Leaf369 is characterized by its cocci shape and the presence of flagella, which suggests it has the ability to exhibit motility. This species contains a single replicon, indicating a streamlined genetic organization, which may facilitate its adaptability to different environments. The accession number for this strain is LMQA00000000.1, which serves as a reference point for genomic and taxonomic studies. The presence of flagella in Geodermatophilus sp. Leaf369 may provide insights into its ecological niche, suggesting potential roles in soil environments where motility can be advantageous for navigating through substrates or accessing nutrients. The cocci shape may also play a role in its survival strategies, as this morphology can be associated with resilience in various environmental conditions. Overall, Geodermatophilus sp. Leaf369 exemplifies the diversity and adaptability of microbial life in soil ecosystems. Its traits, such as cocci morphology and motility capabilities, position it as a potential contributor to soil biogeochemical processes, possibly influencing nutrient cycling and interactions within microbial communities. Further research could illuminate its specific ecological roles and the implications of its genetic makeup in environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus sp. Leaf369
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geodermatophilus sp. Leaf369 contig_8, whole genome shotgun

Gene Summary

Adenine Count

569143 bp

Thymine Count

565100 bp

Guanine Count

1612039 bp

Cytosine Count

1622492 bp

Genome Length

4368819 bp

Protein-coding Genes

4093 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dead/deah box helicaseASG36_21125P30015Negative4324544 - 4329202165057.0
acyl-coa dehydrogenaseASG36_21130P51174Positive4329298 - 433044341699.4
hypothetical proteinASG36_21135Not AvailablePositive4330460 - 433113123607.8
hypothetical proteinASG36_21140Not AvailablePositive4331278 - 43314727233.63
nad(p)-dependent oxidoreductaseASG36_21145Not AvailableNegative4331495 - 433235228886.0
hxlr family transcriptional regulatorASG36_21150P0ACN2Positive4332433 - 433281614245.0
dna recombination/repair protein recaASG36_21155C1B381Positive4332998 - 433403236392.7
hypothetical proteinASG36_21160P59211Positive4334041 - 433551350480.0
hypothetical proteinASG36_21165Not AvailableNegative4335536 - 433591313334.7
amino acid abc transporter permeaseASG36_21170Q8RQL4Negative4335970 - 433686331832.2

Displaying genes 4111 – 4120 of 4146 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

352 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 352 metabolites

Health Effects

No health effects information available for this bacterium.