Deinococcus sp. Leaf326

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus sp. Leaf326 is a distinctive bacterial strain characterized by the presence of flagella, indicating its capability for motility. This trait is significant as it allows the organism to navigate its environment, potentially aiding in colonization and survival in various ecological niches. The strain is noted to possess a single replicon, which is indicative of its genomic structure. This trait can have implications for the organism's genetic stability and replication efficiency. The accession number for Deinococcus sp. Leaf326 is LMOM00000000.1, which can be used for further research and verification of its genomic data. This strain belongs to the genus Deinococcus, known for its resilience to extreme conditions, including radiation and desiccation. Given the combination of its motility through flagella and its genomic characteristics, Deinococcus sp. Leaf326 may play a role in biogeochemical cycles within its habitat. The ability to move could facilitate the degradation of organic materials or contribute to nutrient cycling, which is important in maintaining ecosystem health. Further research into this strain could provide insights into its ecological roles and potential applications in biotechnology, such as bioremediation or bioengineering.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus sp. Leaf326
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus sp. Leaf326 contig_99, whole genome shotgun sequence.

Gene Summary

Adenine Count

746651 bp

Thymine Count

753226 bp

Guanine Count

1554523 bp

Cytosine Count

1546686 bp

Genome Length

4602077 bp

Protein-coding Genes

4249 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hnh endonucleaseASF71_08930Not AvailableNegative3013553 - 301411320892.0
marc family transcriptional regulatorASF71_08935O66819Negative3014290 - 301494022788.9
hypothetical proteinASF71_08940Not AvailableNegative3014940 - 30151648211.84
short-chain dehydrogenaseASF71_08945A6SSW9Negative3015368 - 301620430014.3
hypothetical proteinASF71_08950Not AvailableNegative3016355 - 301698421435.3
hypothetical proteinASF71_08955Not AvailableNegative3017089 - 301985193362.9
fur family transcriptional regulatorASF71_08960O69451Negative3019949 - 302034714312.2
biotin--acetyl-coa-carboxylase ligaseASF71_08965I6YFP0Positive3020484 - 302144033190.8
biotin biosynthesis protein bioyASF71_08970Q2KBP7Positive3021437 - 302202420147.3
dna recombination/repair protein recaASF71_08975P42443Negative3023384 - 302445437743.6

Displaying genes 2871 – 2880 of 4303 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

225 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 225 metabolites

Health Effects

No health effects information available for this bacterium.