Rhizobium sp. Leaf306

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Leaf306 is characterized as a rod-shaped bacterium with the presence of flagella, which suggests motility. This motility could facilitate its movement towards plant roots, where it establishes symbiotic relationships. Notably, Rhizobium species are known for their ability to form nodules on the roots of leguminous plants, enabling nitrogen fixation—a crucial process for enhancing soil fertility and agricultural productivity. The genome of Rhizobium sp. Leaf306 contains a single replicon, indicating a streamlined genetic organization that may contribute to its efficiency in symbiotic nitrogen fixation. The accession number for this strain is LMNX00000000.1, which serves as a reference for genomic studies and further research into its biological functions. The ecological significance of Rhizobium sp. Leaf306 lies in its potential role in sustainable agriculture, particularly in legume cropping systems. By fixing atmospheric nitrogen, it can reduce the need for synthetic fertilizers, promoting environmentally friendly farming practices. Understanding the characteristics of Rhizobium sp. Leaf306 can lead to improved agricultural strategies that leverage natural processes for nitrogen supply, thereby enhancing soil health and crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Leaf306
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Leaf306
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Leaf306 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

994926 bp

Thymine Count

995408 bp

Guanine Count

1514483 bp

Cytosine Count

1504297 bp

Genome Length

5009159 bp

Protein-coding Genes

4516 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxybenzoate 3-monooxygenaseASG19_15860P00438Positive3358454 - 335962343301.5
crp/fnr family transcriptional regulatorASG19_15865Not AvailablePositive3359845 - 336059727505.2
abc transporter atp-binding proteinASG19_15870P45861Negative3360591 - 336225257977.1
abc transporter atp-binding proteinASG19_15875P29018Negative3362249 - 336398861975.9
cytochrome d terminal oxidase subunit 1ASG19_15880P0ABK0Positive3364173 - 336575658426.7
cytochrome d ubiquinol oxidase subunit 2ASG19_15885P0ABK4Positive3365781 - 336692940826.6
cytochrome bd biosynthesis proteinASG19_15890Not AvailablePositive3366942 - 33671005874.15
coproporphyrinogen iii oxidaseASG19_15895O31381Positive3367097 - 336842848793.2
hypothetical proteinASG19_15900Not AvailablePositive3368584 - 336899715551.3
rnd transporterASG19_15905P25197Negative3369082 - 3372150108810.0

Displaying genes 3131 – 3140 of 4609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

289 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 289 metabolites

Health Effects

No health effects information available for this bacterium.