Duganella sp. Leaf126

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Duganella

Description

Duganella sp. Leaf126 is a Gram-negative bacterium characterized by its rod-shaped morphology. It has a single replicon, indicating a streamlined genetic organization that is typical of many bacteria within its classification. The strain's accession number is LMNW00000000.1, which provides a unique identifier for genomic studies and comparisons with other microbial species. The Gram-negative nature of Duganella sp. Leaf126 suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant as it often influences the bacterium's interactions with its environment, including its resistance to certain antibiotics and its ability to thrive in diverse ecological niches. In terms of ecological significance, members of the Duganella genus are often associated with plant environments, indicating that Duganella sp. Leaf126 may play a role in plant-microbe interactions. This can include contributions to nutrient cycling, plant health, or even biocontrol of plant pathogens. Understanding the specific ecological roles of Duganella sp. Leaf126 can provide insights into its potential applications in agriculture or environmental microbiology, particularly regarding its interactions within the rhizosphere or other plant-associated habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusDuganella
SpeciesDuganella sp. Leaf126
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duganella sp. Leaf126 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

925269 bp

Thymine Count

929176 bp

Guanine Count

1726242 bp

Cytosine Count

1734070 bp

Genome Length

5315014 bp

Protein-coding Genes

4283 genes

Non-Coding Genes

115 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseASF61_10265Not AvailableNegative3482308 - 348337241092.1
flagellar biosynthesis protein flhaASF61_10270P76298Negative3483450 - 348558875234.7
flagellar biosynthetic protein flhbASF61_10275P40727Negative3485585 - 348679343738.4
16s rrna pseudouridine(516) synthaseASF61_10280Q8D8X2Negative3486908 - 348762726714.9
hypothetical proteinASF61_10285Not AvailablePositive3487796 - 348815212848.2
peptidase s49ASF61_10290Q8YFI5Negative3488337 - 348937436756.1
rieske (2fe-2s) proteinASF61_10295Not AvailableNegative3489396 - 348976112992.3
had family hydrolaseASF61_10300Q48A85Negative3489773 - 349043224323.3
rna pseudouridine synthaseASF61_10305Q9CM51Negative3490475 - 349150037653.6
ribonuclease eASF61_10310P44443Positive3492213 - 3495755123454.0

Displaying genes 2901 – 2910 of 4398 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

264 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 264 metabolites

Health Effects

No health effects information available for this bacterium.