Nocardioides sp. Leaf285

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Leaf285 is characterized by having a single replicon, indicating a simple genomic structure, which is typical for some bacteria. The accession number for this strain is LMNH00000000.1, which serves as a reference for its genomic data in biological databases. Nocardioides species are known for their role in the degradation of various organic compounds, which suggests that Nocardioides sp. Leaf285 may possess similar capabilities. This trait positions it as a potential candidate for bioremediation applications, particularly in environments contaminated with organic pollutants. The ecological role of Nocardioides sp. Leaf285 could involve the breakdown of complex molecules, thereby contributing to nutrient cycling within its ecosystem. Additionally, the presence of a single replicon may reflect adaptations to specific environmental niches, allowing for efficient replication and survival in varied conditions. The genomic simplicity could also facilitate further studies into its metabolic pathways and interactions within microbial communities. In summary, Nocardioides sp. Leaf285, with its single replicon and potential for organic degradation, highlights the ecological importance of this genus in biogeochemical cycles and its possible applications in environmental biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Leaf285
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Leaf285 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

564387 bp

Thymine Count

564820 bp

Guanine Count

1601292 bp

Cytosine Count

1607230 bp

Genome Length

4337757 bp

Protein-coding Genes

3888 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent oxidoreductaseASF47_15000Not AvailablePositive3213537 - 321439730384.4
sodium:proton antiporterASF47_15005P9WJI2Negative3214425 - 321629066463.1
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthaseASF47_15010A1SE17Negative3216324 - 321800058393.6
o-succinylbenzoate synthaseASF47_15015Q47Q21Negative3217997 - 321896834138.7
amp-dependent synthetaseASF47_15020P9WQ38Negative3218989 - 322006237630.7
hypothetical proteinASF47_15025Not AvailablePositive3220109 - 322143746441.5
1,4-dihydroxy-2-naphthoate octaprenyltransferaseASF47_15030P65651Positive3221473 - 322236029769.8
hypothetical proteinASF47_15035Not AvailableNegative3222601 - 322291211480.7
hypothetical proteinASF47_15040Not AvailablePositive3223003 - 32232549334.38
c-type cytochrome biogenesis protein ccsbASF47_15045P22554Negative3223324 - 322436737376.2

Displaying genes 2891 – 2900 of 3941 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

269 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 269 metabolites

Health Effects

No health effects information available for this bacterium.