Nocardioides sp. Leaf285

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Leaf285 is characterized by having a single replicon, indicating a simple genomic structure, which is typical for some bacteria. The accession number for this strain is LMNH00000000.1, which serves as a reference for its genomic data in biological databases. Nocardioides species are known for their role in the degradation of various organic compounds, which suggests that Nocardioides sp. Leaf285 may possess similar capabilities. This trait positions it as a potential candidate for bioremediation applications, particularly in environments contaminated with organic pollutants. The ecological role of Nocardioides sp. Leaf285 could involve the breakdown of complex molecules, thereby contributing to nutrient cycling within its ecosystem. Additionally, the presence of a single replicon may reflect adaptations to specific environmental niches, allowing for efficient replication and survival in varied conditions. The genomic simplicity could also facilitate further studies into its metabolic pathways and interactions within microbial communities. In summary, Nocardioides sp. Leaf285, with its single replicon and potential for organic degradation, highlights the ecological importance of this genus in biogeochemical cycles and its possible applications in environmental biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Leaf285
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Leaf285 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

564387 bp

Thymine Count

564820 bp

Guanine Count

1601292 bp

Cytosine Count

1607230 bp

Genome Length

4337757 bp

Protein-coding Genes

3888 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASF47_12045Not AvailableNegative2608988 - 260932312032.1
hypothetical proteinASF47_12050Not AvailableNegative2609435 - 261028030858.0
hypothetical proteinASF47_12055Not AvailableNegative2610329 - 26105266751.25
hypothetical proteinASF47_12060P14488Negative2610630 - 261149030358.7
hypothetical proteinASF47_12065Not AvailableNegative2611990 - 261271524782.7
hrca family transcriptional regulatorASF47_12070A1SHX8Positive2612990 - 261402136793.9
molecular chaperone dnajASF47_12075Q9RDD7Positive2614197 - 261537841731.2
16s rrna methyltransferaseASF47_12080P67203Positive2615386 - 261612625618.8
hypothetical proteinASF47_12085Not AvailableNegative2616385 - 261733532168.4
histidine triad (hit) proteinASF47_12090O66536Positive2617513 - 261785111800.9

Displaying genes 2321 – 2330 of 3941 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

269 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 269 metabolites

Health Effects

No health effects information available for this bacterium.