Pseudorhodoferax sp. Leaf265

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Pseudorhodoferax

Description

Pseudorhodoferax sp. Leaf265 is characterized by having a single replicon, indicating a streamlined genomic organization. This trait is essential for prokaryotic cells, as it impacts the efficiency of replication and cell division. The organism is cataloged under the accession number LMMT00000000.1, which provides a reference point for genetic and genomic studies. The specific phylogenetic positioning of Pseudorhodoferax sp. Leaf265 suggests its relevance in microbial diversity and ecology, particularly in environments where it may thrive. While the exact ecological niche of this strain is not detailed, the genus Pseudorhodoferax is known to be involved in various biogeochemical processes, potentially including carbon cycling and organic matter decomposition. Understanding the genomic features of Pseudorhodoferax sp. Leaf265 can lead to insights about its metabolic capabilities and ecological roles. The presence of a single replicon may confer advantages in rapid adaptation to environmental changes, making it a candidate for studies focusing on microbial resilience and survival in fluctuating ecosystems. In summary, Pseudorhodoferax sp. Leaf265, with its singular replicon and specific genomic identification, could play a significant role in its native habitat, contributing to microbial community dynamics and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPseudorhodoferax
SpeciesPseudorhodoferax sp. Leaf265
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudorhodoferax sp. Leaf265 contig_9, whole genome shotgun

Gene Summary

Adenine Count

1155973 bp

Thymine Count

1153492 bp

Guanine Count

2581367 bp

Cytosine Count

2585153 bp

Genome Length

7476079 bp

Protein-coding Genes

6606 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite tricarboxylate transporter tctaASF45_00200Not AvailablePositive39266 - 4076852145.2
glyoxalaseASF45_00205Not AvailablePositive40857 - 4128515607.1
abc transporter substrate-binding proteinASF45_00210Not AvailablePositive41381 - 4236434412.7
sensory proteinASF45_00215P17057Negative42372 - 4288118777.2
hypothetical proteinASF45_00220Not AvailableNegative42947 - 4344118310.0
acyl-coa dehydrogenaseASF45_00225Q5ZHT1Positive43634 - 4480042897.4
lysr family transcriptional regulatorASF45_00230Not AvailableNegative44821 - 4570231476.8
hypothetical proteinASF45_00235Not AvailablePositive45792 - 4691041748.1
mfs transporterASF45_00240Not AvailablePositive46945 - 4790433058.1
carboxyvinyl-carboxyphosphonate phosphorylmutaseASF45_00245Not AvailablePositive47901 - 4877330949.0

Displaying genes 71 – 80 of 6683 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

467 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da

Displaying 1–10 of 467 metabolites

Health Effects

No health effects information available for this bacterium.