Sphingomonas sp. Leaf67

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf67 is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility in various environments. This species possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genomic sequence of Sphingomonas sp. Leaf67 is available under the accession number LMLP00000000.1, providing a valuable resource for further studies into its genetic makeup and functional capabilities. The presence of flagella suggests that Sphingomonas sp. Leaf67 may have enhanced mobility, allowing it to navigate through diverse environments such as soil, water, or plant surfaces. This motility can be advantageous for colonization and interaction with other microorganisms or host organisms. In an ecological context, Sphingomonas species are known for their role in the degradation of complex organic compounds, particularly those derived from plant materials. This ability to metabolize a range of substrates can make Sphingomonas sp. Leaf67 significant in nutrient cycling within its environment. Understanding the specific ecological roles of Sphingomonas sp. Leaf67 may provide insights into its potential applications in bioremediation or sustainable agricultural practices, where the breakdown of organic pollutants or enhancement of soil health is desirable.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf67
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf67
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf67 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

715003 bp

Thymine Count

714252 bp

Guanine Count

1374775 bp

Cytosine Count

1388844 bp

Genome Length

4192908 bp

Protein-coding Genes

3639 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidate cytidylyltransferaseASE90_00635Q8YHH2Negative145027 - 14583027856.0
udp pyrophosphate synthaseASE90_00640Q9X5F1Negative145827 - 14653426059.4
ribosome-recycling factorASE90_00645A5V3G5Negative146588 - 14714520135.1
uridylate kinaseASE90_00650Q9X5E9Negative147164 - 14788625478.8
elongation factor tsASE90_00655A5V3G3Negative148033 - 14896232121.5
30s ribosomal protein s2ASE90_00660Q1GRQ0Negative149053 - 14983528049.6
hypothetical proteinASE90_00665Not AvailablePositive150093 - 1503178057.16
cdp-diacylglycerol o-phosphatidyltransferaseASE90_00670P59949Negative150280 - 15104727712.4
phosphatidylserine decarboxylaseASE90_00675Q1GRP7Negative151050 - 15178126266.0
isocitrate dehydrogenaseASE90_00680P50215Positive151903 - 15312345653.5

Displaying genes 141 – 150 of 3700 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

253 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 253 metabolites

Health Effects

No health effects information available for this bacterium.