Sphingomonas sp. Leaf38

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf38 is characterized as a rod-shaped bacterium with a single replicon. This organism possesses flagella, which suggests motility and potential for environmental adaptation. The presence of flagella can enhance its ability to navigate various environments, potentially aiding in colonization and nutrient acquisition. The specific accession number for Sphingomonas sp. Leaf38 is LMLD00000000.1, which is relevant for further genomic and taxonomic studies. This accession allows researchers to access genetic data and explore the organism's characteristics in greater detail. In terms of ecological significance, members of the Sphingomonas genus are often associated with the degradation of complex organic compounds, including xenobiotics. This ability to metabolize environmental pollutants highlights their potential role in bioremediation strategies. The motility conferred by flagella may also facilitate their movement towards nutrient sources or areas of contamination. As such, Sphingomonas sp. Leaf38 may contribute to the ecological dynamics of its habitat, particularly in soil or water ecosystems where organic degradation is vital for nutrient cycling and ecosystem health. Understanding the traits and capabilities of this bacterium can provide insights into its functional role in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf38
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf38
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf38 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

682188 bp

Thymine Count

679056 bp

Guanine Count

1313317 bp

Cytosine Count

1311031 bp

Genome Length

3994960 bp

Protein-coding Genes

3413 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE88_15995Not AvailableNegative3762511 - 37626996416.86
pp_03314ASE88_16000Not AvailablePositive3762934 - 3764043Not Available
excinuclease abc subunit bASE88_16005Not AvailablePositive3764058 - 37643068937.8
phzf family phenazine biosynthesis proteinASE88_16010Q9I073Negative3764362 - 376515328087.5
ferrous iron transporterASE88_16015B4TPS5Negative3765150 - 376609734211.2
pyridoxamine 5'-phosphate oxidaseASE88_16020Q1GVE7Negative3766094 - 376667221732.2
dna repair proteinASE88_16025B8EKE1Positive3766782 - 376764831985.4
atp-dependent dna ligaseASE88_16030Q9I1X7Positive3767726 - 377024891208.5
hypothetical proteinASE88_16035P9WL96Positive3770515 - 377302289074.0
transglutaminaseASE88_16040Not AvailablePositive3773205 - 377409831837.0

Displaying genes 3301 – 3310 of 3490 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

274 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 274 metabolites

Health Effects

No health effects information available for this bacterium.