Sphingomonas sp. Leaf30

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf30 is a rod-shaped bacterium characterized by the presence of flagella, which suggests the ability for motility. This feature is significant as it may enhance the bacterium's ability to navigate through its environment, potentially influencing its ecological interactions and nutrient acquisition strategies. The genomic structure of Sphingomonas sp. Leaf30 is notable for containing a single replicon, which indicates a streamlined genetic organization that could be advantageous for its adaptability and efficiency in various ecological niches. The accession number for this organism is LMKZ00000000.1, which serves as a reference for researchers seeking to explore its genetic and functional attributes further. The ecological role of Sphingomonas sp. Leaf30 can be inferred from its classification within the Sphingomonadaceae family, which is known for its diverse metabolic capabilities, particularly in the degradation of complex organic compounds. This rod-shaped bacterium may contribute to the breakdown of organic matter in its habitat, playing a crucial role in nutrient cycling and ecosystem health. In summary, Sphingomonas sp. Leaf30, with its motile rod shape and single replicon, represents a specialized microbial entity that could be integral to its ecological community, particularly in processes related to organic matter decomposition and nutrient recycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf30
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf30
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf30 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

746523 bp

Thymine Count

753517 bp

Guanine Count

1462613 bp

Cytosine Count

1431899 bp

Genome Length

4403081 bp

Protein-coding Genes

3719 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase subunit betaASE89_07055P15110Negative2494934 - 249565026337.1
succinyl-coa--3-ketoacid-coa transferaseASE89_07060Not AvailableNegative2495647 - 249630922838.7
succinyl-coa--3-ketoacid-coa transferaseASE89_07065Not AvailableNegative2496309 - 249701925678.8
4-hydroxybenzoate 3-monooxygenaseASE89_07070P20586Negative2497033 - 249821443374.6
arac family transcriptional regulatorASE89_07075Not AvailablePositive2498343 - 249925433380.8
salicylaldehyde dehydrogenaseASE89_07085O69763Positive2500671 - 250208348971.2
p-hydroxycinnamoyl coa hydratase/lyaseASE89_07090O69762Positive2502205 - 250304130889.7
coa-binding proteinASE89_07095A0A2P1BT06Positive2503160 - 250528373359.6
marr family transcriptional regulatorASE89_07100Not AvailableNegative2505280 - 250574716718.1
mfs transporterASE89_07105O30513Negative2505762 - 250706644820.9

Displaying genes 2221 – 2230 of 3802 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

281 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 281 metabolites

Health Effects

No health effects information available for this bacterium.