Sphingomonas sp. Leaf29

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf29 is characterized by its rod-shaped morphology and the presence of flagella, which suggests it is motile and capable of navigating through various environments. This motility may confer advantages in colonization and interaction with its surroundings, particularly in complex ecological niches such as leaf surfaces. The genome of Sphingomonas sp. Leaf29 contains a single replicon, indicating a streamlined genetic architecture that may facilitate efficient replication and adaptation. The genomic data is accessible under the accession number LMKY00000000.1, which allows for further exploration and study of its genetic characteristics. Ecologically, Sphingomonas species are known for their versatility in degrading a variety of organic compounds. This trait may enable Sphingomonas sp. Leaf29 to play a significant role in the decomposition of plant material, contributing to nutrient cycling within its environment. Its ability to survive and thrive on leaf surfaces may also suggest a potential role in plant-microbe interactions, possibly influencing plant health and growth. Overall, Sphingomonas sp. Leaf29 exemplifies the adaptability and ecological significance of bacteria within leaf ecosystems, highlighting the intricate relationships between microbial life and plant environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf29


Gene Summary

Adenine Count

651515 bp

Thymine Count

654501 bp

Guanine Count

1319920 bp

Cytosine Count

1319540 bp

Genome Length

3945508 bp

Protein-coding Genes

3489 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
TerminaseASE81_05650Not AvailablePositive1888008 - 188931546572.8
Portal proteinASE81_05655Q4UM95Positive1889791 - 189091239635.4
hypothetical proteinASE81_05660Not AvailablePositive1891220 - 189152810835.1
Putative prohead proteaseASE81_05665Not AvailablePositive1891516 - 189189312942.7
Putative major capsid proteinASE81_05670Not AvailablePositive1892146 - 189311733704.9
hypothetical proteinASE81_05675Not AvailablePositive1893227 - 189372117170.1
hypothetical proteinASE81_05680Not AvailablePositive1893718 - 18939216994.4
hypothetical proteinASE81_05685Not AvailablePositive1893918 - 189429813268.3
Gene transfer aget (gta) orfg9-like phage major tail proteinASE81_05690Not AvailablePositive1894587 - 189499413870.3
hypothetical proteinASE81_05695Not AvailablePositive1894991 - 189530210594.0

Displaying genes 1 – 10 of 3553 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

245 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 245 metabolites

Health Effects

No health effects information available for this bacterium.