Sphingomonas sp. Leaf22

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf22 is a rod-shaped bacterium that possesses flagella, enabling motility. This organism is classified under the genus Sphingomonas, which is known for its diverse metabolic capabilities. Sphingomonas sp. Leaf22 has a single replicon, indicating a streamlined genomic structure. The accession number for this strain is LMKP00000000.1, which provides a reference for genomic data and further research. The presence of flagella suggests that Sphingomonas sp. Leaf22 may exhibit a degree of environmental adaptability, allowing it to navigate through various habitats. Rod-shaped bacteria are often associated with efficient nutrient uptake and resource utilization, which can play a significant role in their ecological niches. In the context of microbial ecology, Sphingomonas species are typically found in a variety of environments, including soil and water, where they can contribute to biogeochemical cycles. Their metabolic versatility may allow them to participate in the degradation of complex organic compounds, thereby influencing nutrient cycling and ecosystem health. Understanding the characteristics of Sphingomonas sp. Leaf22 can provide insights into its ecological role and potential applications in bioremediation or agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf22
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf22
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf22 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

710023 bp

Thymine Count

712503 bp

Guanine Count

1394762 bp

Cytosine Count

1398870 bp

Genome Length

4216368 bp

Protein-coding Genes

3649 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
competence protein comeaASE70_18930Not AvailablePositive3012740 - 30129467312.47
hypothetical proteinASE70_18935Not AvailablePositive3013314 - 301362511265.0
repa family proteinASE70_18940P60119Positive3013763 - 301470734998.6
hypothetical proteinASE70_18945Not AvailablePositive3015122 - 301594329183.5
malate:quinone oxidoreductaseASE70_18950B2FSQ8Positive3016208 - 301792962686.7
sulfate transporterASE70_18955P55189Negative3018325 - 301981252060.6
hypothetical proteinASE70_18960Not AvailablePositive3020165 - 302091126423.7
hypothetical proteinASE70_18965Not AvailablePositive3021034 - 302189730731.3
hypothetical proteinASE70_18970Not AvailablePositive3022061 - 302234811202.7
hypothetical proteinASE70_18975Not AvailableNegative3023085 - 30232978447.83

Displaying genes 2671 – 2680 of 3729 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

249 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 249 metabolites

Health Effects

No health effects information available for this bacterium.