Pseudomonas sp. Leaf15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Leaf15 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic data for this strain is accessible under the accession number LMKI00000000.1. The significance of Pseudomonas sp. Leaf15 lies in its potential ecological roles, particularly within plant-associated environments. Pseudomonas species are often recognized for their versatility and ability to thrive in diverse habitats, including soil and plant surfaces. This capability allows them to engage in various interactions with plants, which can include promoting growth or acting as biocontrol agents against plant pathogens. Understanding the genomic configuration, particularly the presence of a single replicon, may offer insights into the evolutionary strategies employed by Pseudomonas sp. Leaf15. The streamlined genome could enhance its efficiency in nutrient utilization and stress response, crucial traits for survival in competitive ecological niches. In summary, Pseudomonas sp. Leaf15, with its single replicon and documented genomic information, represents a valuable subject for further research into its ecological interactions and potential applications in agriculture and biocontrol.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Leaf15
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Leaf15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Leaf15 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1314831 bp

Thymine Count

1295692 bp

Guanine Count

1965277 bp

Cytosine Count

1980840 bp

Genome Length

6556788 bp

Protein-coding Genes

5749 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein tyrosine phosphataseASE80_12205Not AvailableNegative5221732 - 522241825025.1
gluconate 2-dehydrogenaseASE80_12210O34213Positive5222693 - 522344527226.3
gmc family oxidoreductaseASE80_12215Not AvailablePositive5223448 - 522523265156.1
alcohol dehydrogenaseASE80_12220O34215Positive5225245 - 522654346386.6
radical sam proteinASE80_12225P9WL78Positive5226625 - 522768339382.7
carbonate dehydrataseASE80_12230Q9I262Positive5227910 - 522864126544.6
sulp family inorganic anion transporterASE80_12235O06984Positive5228727 - 523027453855.7
hypothetical proteinASE80_12240Not AvailableNegative5230405 - 523105223908.4
cytochrome b559 subunit alphaASE80_12245Q1RI44Positive5231421 - 523254841825.6
cytochrome oxidase subunit iASE80_12250P31833Positive5232607 - 523419058488.8

Displaying genes 4671 – 4680 of 5872 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

419 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 419 metabolites

Health Effects

No health effects information available for this bacterium.