Sphingomonas sp. Leaf10

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf10 is characterized as a rod-shaped bacterium possessing a single flagellum, which facilitates its motility. The organism's genome is organized into one replicon, indicating a relatively simple genomic structure. The genomic information can be accessed through the accession number LMKE00000000.1, providing a valuable resource for researchers interested in studying its genetic makeup and potential applications. The presence of a flagellum suggests that Sphingomonas sp. Leaf10 is capable of active movement, which may play a significant role in its ecological interactions, such as nutrient acquisition and colonization of various environments. Rod-shaped bacteria like Sphingomonas are often involved in diverse ecological niches, including soil and plant-associated habitats, where they may participate in important biogeochemical cycles. The traits of Sphingomonas sp. Leaf10 highlight its potential role in the environment, particularly in relation to its motility and adaptability. Understanding the specific ecological functions and interactions of this bacterium could provide insights into its contributions to microbial communities, bioremediation processes, or plant health. Further research may elucidate the functional capabilities of Sphingomonas sp. Leaf10 and its significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf10
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf10


Gene Summary

Adenine Count

705691 bp

Thymine Count

705144 bp

Guanine Count

1357492 bp

Cytosine Count

1357392 bp

Genome Length

4135713 bp

Protein-coding Genes

3615 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Portal proteinASE59_06320Q4UM95Negative3357613 - 335874039481.1
Large packaging proteinASE59_06325Not AvailableNegative3359090 - 336039746590.9
oxidoreductaseASE59_00005O33730Positive135 - 100129695.2
5s ribosomal rnaNot AvailableNot AvailablePositive151 - 265Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive369 - 3165Not Available
metal-dependent hydrolaseASE59_00010Not AvailablePositive998 - 267159467.8
hypothetical proteinASE59_00015Not AvailablePositive2740 - 340822927.0
16s ribosomal rnaNot AvailableNot AvailablePositive3969 - 5465Not Available
two-component system response regulatorASE59_00020P0CAW8Negative3495 - 419626253.0
lysr family transcriptional regulatorASE59_00025P52689Negative4348 - 525032055.5

Displaying genes 11 – 20 of 3674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

252 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 252 metabolites

Health Effects

No health effects information available for this bacterium.