Lysobacter sp. Root96

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter sp. Root96 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This taxonomic classification places it within the Lysobacter genus, which is known for its ecological roles and potential applications in biocontrol and bioremediation. The organism is cataloged under the accession number LMJN00000000.1, which is part of the database entries that facilitate further research and comparative studies within microbial ecology and systematics. As a member of the Lysobacter genus, Lysobacter sp. Root96 may exhibit traits such as the production of antimicrobial compounds, which can be beneficial in suppressing plant pathogens and promoting plant health. The ecological significance of Lysobacter sp. Root96 may extend to its interactions within soil microbiomes, where it could contribute to nutrient cycling and the overall health of the ecosystem. The traits of being Gram-negative and rod-shaped suggest adaptability to various environments, potentially allowing it to thrive in diverse soil conditions. In summary, Lysobacter sp. Root96 is a Gram-negative, rod-shaped bacterium with a single replicon, which may play a valuable role in its native ecological niches, especially concerning plant health and soil dynamics. Its potential for biocontrol applications highlights the importance of studying such microorganisms in the context of sustainable agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter sp. Root96
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter sp. Root96
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter sp. Root96 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

695867 bp

Thymine Count

697887 bp

Guanine Count

1511679 bp

Cytosine Count

1509194 bp

Genome Length

4415595 bp

Protein-coding Genes

3776 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta hydrolaseASE45_08725Not AvailableNegative1933989 - 193476227888.4
threonine aldolaseASE45_08730Not AvailableNegative1934945 - 193599436269.2
deoxycytidine triphosphate deaminaseASE45_08735Not AvailableNegative1936024 - 193633511870.9
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolaseASE45_08740Not AvailablePositive1936405 - 193728030768.3
inosine-5'-monophosphate dehydrogenaseASE45_08745Not AvailablePositive1937541 - 193899851621.6
gmp synthetaseASE45_08750Not AvailablePositive1939060 - 194062857459.9
mfs transporterASE45_08755Not AvailableNegative1940819 - 194239354572.8
lysr family transcriptional regulatorASE45_08760Not AvailablePositive1942658 - 194353932119.1
deoxycytidylate deaminaseASE45_08765Not AvailablePositive1943681 - 194412715978.2
hypothetical proteinASE45_08770Not AvailableNegative1944467 - 194495217917.0

Displaying genes 1741 – 1750 of 3887 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.