Microbacterium sp. Root280D1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root280D1 is characterized as a rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The genomic data for this organism is accessible under the accession number LMJK00000000.1, which allows for further exploration and study of its genetic makeup. As a member of the Microbacterium genus, this species is likely to exhibit traits typical of the group, such as the ability to degrade complex organic materials and potential roles in nutrient cycling. These characteristics may suggest ecological functions in soil or plant-associated environments, where Microbacterium species are often found. The presence of Microbacterium sp. Root280D1 in such habitats could indicate its involvement in processes that enhance soil health and fertility, potentially contributing to plant growth and ecosystem stability. In summary, Microbacterium sp. Root280D1, with its rod shape and single replicon, represents a specific lineage within the diverse Microbacterium genus. Its potential ecological roles highlight the importance of microbial diversity in maintaining healthy ecosystems. Further research into its genomic characteristics could provide insights into its metabolic capabilities and ecological contributions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root280D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root280D1 contig_4, whole genome shotgun

Gene Summary

Adenine Count

571841 bp

Thymine Count

574403 bp

Guanine Count

1230225 bp

Cytosine Count

1217019 bp

Genome Length

3593515 bp

Protein-coding Genes

3366 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE34_02350Not AvailableNegative461394 - 46229932679.9
3',5'-cyclic-nucleotide phosphodiesteraseASE34_02355P9WP64Negative462599 - 46351031673.4
hypothetical proteinASE34_02360P18811Negative463551 - 46458835330.1
iron abc transporter permeaseASE34_02365P55452Negative464585 - 46629762319.3
abc transporterASE34_02370Q1AS06Negative466458 - 46747436660.2
abc transporter substrate-binding proteinASE34_02375P55454Negative467521 - 46859738296.9
abc transporter atp-binding proteinASE34_02380Q57RB2Negative468873 - 47052559712.9
lysr family transcriptional regulatorASE34_02385Q04778Negative470704 - 47161232839.8
glucarate dehydrataseASE34_02390Q9RDE9Positive471787 - 47305845502.1
hypothetical proteinASE34_02395Q59516Positive473067 - 47403534317.0

Displaying genes 501 – 510 of 3436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

240 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 240 metabolites

Health Effects

No health effects information available for this bacterium.