Ensifer sp. Root278

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Ensifer

Description

Ensifer sp. Root278 is characterized by having a single replicon, which is an important trait that influences its genomic structure and replication processes. The strain is cataloged under the accession number LMJJ00000000.1, indicating its genetic sequence is available for further study in genomic databases. The classification of Ensifer sp. Root278 places it within the broader context of the Ensifer genus, which is known for its nitrogen-fixing capabilities and symbiotic relationships with plants, particularly legumes. This trait is essential in ecological systems, as it contributes to soil fertility and plant growth by converting atmospheric nitrogen into a form that can be utilized by plants. The presence of a single replicon may suggest a streamlined genome, which could be indicative of an adaptation to specific environmental niches. This could potentially enhance the organism's efficiency in nutrient uptake and its symbiotic functions. In summary, the traits of Ensifer sp. Root278, particularly its single replicon and accession number, highlight its potential significance in agricultural microbiology and ecological studies, especially concerning its role in nitrogen fixation and plant symbiosis. Further research could elucidate its specific contributions to soil health and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusEnsifer
SpeciesEnsifer sp. Root278
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ensifer sp. Root278 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1341082 bp

Thymine Count

1350958 bp

Guanine Count

2218446 bp

Cytosine Count

2184590 bp

Genome Length

7095460 bp

Protein-coding Genes

6382 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sarcosine oxidase subunit deltaASE60_25100O87387Positive1462027 - 146230510711.5
sarcosine oxidase subunit alphaASE60_25105O87386Positive1462302 - 1465259105174.0
hypothetical proteinASE60_25110Not AvailablePositive1465270 - 146582419987.9
glycine cleavage system protein tASE60_25115Q63342Positive1466070 - 146849689250.3
branched-chain amino acid transporter permease subunit livhASE60_25120P0AEX8Positive1468786 - 146968832301.9
abc transporter permeaseASE60_25125P21628Positive1469693 - 147107849838.5
abc transporter atp-binding proteinASE60_25130Not AvailablePositive1471078 - 147197132800.6
abc transporter atp-binding proteinASE60_25135Not AvailablePositive1471968 - 147269326461.5
hypothetical proteinASE60_25140Not AvailablePositive1472718 - 147306213446.6
amino acid abc transporter substrate-binding proteinASE60_25145Q8FYS6Positive1473179 - 147429739113.3

Displaying genes 1361 – 1370 of 6456 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

375 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 375 metabolites

Health Effects

No health effects information available for this bacterium.