Nocardioides sp. Root190

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root190 is a bacterium characterized by having a single replicon, which is significant in understanding its genetic stability and replication process. It has been assigned the accession number LMIA00000000.1, indicating its sequence data is accessible for further research and analysis. This organism is a member of the Nocardioides genus, known for its role in soil ecosystems and potential contributions to biogeochemical cycles. Members of this genus are often involved in the degradation of complex organic compounds, which can be crucial for nutrient cycling in various environments. The ecological role of Nocardioides sp. Root190 may include interactions with plant roots, potentially facilitating nutrient uptake or influencing plant health through microbial activity. Understanding the traits of Nocardioides sp. Root190 can provide insights into its functional capabilities and ecological significance, particularly in soil microbiomes where it may contribute to the decomposition of organic matter and the maintenance of soil health. Further research into this species could illuminate its specific interactions within its ecosystem and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root190
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root190 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

744752 bp

Thymine Count

745766 bp

Guanine Count

1763170 bp

Cytosine Count

1760420 bp

Genome Length

5014917 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oxidoreductaseASE01_00265Not AvailableNegative45114 - 4638545264.1
fatty acid--coa ligaseASE01_00270Q0S4D9Negative46382 - 4799257467.2
3-oxoacyl-acp reductaseASE01_00275Q48436Positive48093 - 4885126297.6
short-chain dehydrogenaseASE01_00280P80702Negative48979 - 4975826270.4
tetr family transcriptional regulatorASE01_00285Not AvailableNegative49755 - 5037822507.1
3-ketosteroid-9-alpha-hydroxylaseASE01_00290F1CMX0Positive50519 - 5165243087.3
hypothetical proteinASE01_00295Not AvailablePositive51685 - 519579911.5
short-chain dehydrogenaseASE01_00300B2B3L4Positive51959 - 5275027472.1
iclr family transcriptional regulatorASE01_00305Not AvailableNegative52809 - 5356427121.7
llm class f420-dependent oxidoreductaseASE01_00310Not AvailablePositive53839 - 5469330864.8

Displaying genes 51 – 60 of 4660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

361 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 361 metabolites

Health Effects

No health effects information available for this bacterium.