Pseudomonas sp. Root71

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Root71 is characterized by its single replicon, which is indicative of its genomic structure. The genome of Pseudomonas sp. Root71 is accessible under the accession number LMHY00000000.1, allowing for further exploration of its genetic features and potential applications. Pseudomonas species are known for their versatility in various environments, including soil and water. This particular strain, Root71, may possess traits that contribute to its adaptability and survival in diverse ecological niches. Pseudomonas species are commonly recognized for their roles in bioremediation, plant growth promotion, and their interactions within microbial communities. The genomic characteristics of Pseudomonas sp. Root71 could provide insights into its metabolic capabilities and ecological functions. For instance, Pseudomonas species are often involved in the degradation of organic pollutants, suggesting that Root71 may also play a role in nutrient cycling within its environment. Understanding the traits of Pseudomonas sp. Root71 contributes to a broader knowledge of the ecological roles of Pseudomonas species in various habitats. This information is particularly useful for applications in agriculture and environmental management, where such bacteria can be harnessed for beneficial purposes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Root71
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Root71
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Root71 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1247067 bp

Thymine Count

1253430 bp

Guanine Count

1879605 bp

Cytosine Count

1869358 bp

Genome Length

6249926 bp

Protein-coding Genes

5448 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASD95_01490P33366Negative307757 - 30838923769.4
delta-aminolevulinic acid dehydrataseASD95_01495Q59643Positive308595 - 30960836996.4
polyphosphate kinaseASD95_01500Q87UP6Positive309627 - 31185583384.9
exopolyphosphataseASD95_01505Q9S605Negative311913 - 31341556363.8
amino acid abc transporter atp-binding proteinASD95_01510P48243Negative313650 - 31438726791.8
amino acid abc transporter permeaseASD95_01515P0AFT3Negative314374 - 31502423644.5
abc transporter permeaseASD95_01520P42200Negative315021 - 31568924439.5
amino acid abc transporter substrate-binding proteinASD95_01525P54535Negative315712 - 31649728068.2
gntr family transcriptional regulatorASD95_01530P0ACL7Positive316754 - 31746125258.4
thioredoxinASD95_01535Q9X2T1Positive317582 - 31791111763.2

Displaying genes 351 – 360 of 5556 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

409 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 409 metabolites

Health Effects

No health effects information available for this bacterium.