Rhodanobacter sp. Root179

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. Root179 is a Gram-negative bacterium with a rod-shaped morphology. It is characterized by possessing a single replicon, indicating a streamlined genomic structure. The accession number for this strain is LMHR00000000.1, which provides a reference for its genetic information. The classification of Rhodanobacter sp. Root179 as Gram-negative suggests that it has a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group of bacteria. This structural characteristic may influence its interactions with the environment and other microorganisms. An ecological insight into Rhodanobacter sp. Root179 can be drawn from its classification and traits. Gram-negative bacteria are often involved in various soil processes, including nutrient cycling and bioremediation. The single replicon may suggest a specific adaptation to its ecological niche, potentially allowing for efficient replication and resource use in its environment. As a member of the Rhodanobacter genus, it may play a role in the degradation of sulfur compounds, contributing to the sulfur cycle in soil ecosystems. In summary, Rhodanobacter sp. Root179 is a Gram-negative, rod-shaped bacterium with a single replicon, which may have significant implications for its ecological functions, particularly in nutrient cycling and biogeochemical processes in soil environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. Root179
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. Root179 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

655793 bp

Thymine Count

651430 bp

Guanine Count

1299271 bp

Cytosine Count

1299256 bp

Genome Length

3905750 bp

Protein-coding Genes

3353 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s8ASD82_02400Q2NZZ9Positive525610 - 52600513998.2
50s ribosomal protein l6ASD82_02405Q2P000Positive526017 - 52654418394.3
50s ribosomal protein l18ASD82_02410Q8PNR1Positive526643 - 52699612535.0
30s ribosomal protein s5ASD82_02415B4SKY0Positive527100 - 52760917746.7
50s ribosomal protein l30ASD82_02420B4SKY1Positive527602 - 5278027386.17
50s ribosomal protein l15ASD82_02425A2SLD8Positive527808 - 52823915049.7
preprotein translocase subunit secyASD82_02430P0AGA4Positive528245 - 52956747024.4
30s ribosomal protein s13ASD82_02435B2FQK5Positive529706 - 53006213313.5
30s ribosomal protein s11ASD82_02440Q2P007Positive530146 - 53053213574.5
30s ribosomal protein s4ASD82_02445Q2P008Positive530543 - 53116923492.4

Displaying genes 461 – 470 of 3400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 237 metabolites

Health Effects

No health effects information available for this bacterium.